LOCUS AK063817 1329 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-121-H08, full insert
sequence.
ACCESSION AK063817
VERSION AK063817.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1329)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1329
/clone="001-121-H08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 172..1155
/db_xref="Osa1:LOC_Os01g65480"
/db_xref="RAP-DB:Os01g0875700"
/note="(RAP Annotation release2) Heat shock protein DnaJ
family protein"
/note="(Rice Genome Annotation Project) dnaJ protein
homolog 1, putative, expressed"
/note="mapping to R01-TIGRv4S1-001768F (Chr.1: short
arm=38336488, long arm=38338752, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG88875.1"
/translation="MGNPPELYHRILNIPRETSPQEIRAAYKSLVKKWHPDKHPPSSK
PEAEARFKAITEAYEALLDQQENRAVFGVCCNDGRAGEKAMACGVVGGGGAHIARTRS
DDFGARMAPGTPAREFKKVYSSGNSGGRRAFAEFSSSIMRKAPPLERKLDCTLEELCH
GCKKEVKFTRDVVTKNGSIVKKEVSQMVLVKPGWKKGNKITFEGMGDERPGCLPADAV
FVISEKKHPVFKRVGNDLVLKAEVPLVSALTGWSFSFRLLSGKKVSCSFQDEIICPGY
EKIIKGEGMPIADQKGARGDLRVKFEIAFPKQLTDEQRDGLAQILRGCAWD"
BASE COUNT 307 a 380 c 380 g 262 t
ORIGIN
1 acccacacag ccacactcgc tgtgtttctc ctctgccgct taaccacctc cctccgtaac
61 aaactcctca tttcgctccc ctcccttgct cttcttcttc ttcttcttct tcttcctcct
121 ccgcgaccac caccgatcca tccatccacc gtgtcttctc ttccctctcc aatggggaac
181 cctcccgagc tgtaccaccg catcctcaac atccccaggg agacctcgcc gcaggaaatc
241 cgcgccgcct acaagagcct cgtcaagaaa tggcaccccg acaagcaccc gccgtcctcc
301 aagcccgagg ccgaggcccg cttcaaggcc atcaccgagg cctacgaggc gctccttgac
361 cagcaggaga acagggcggt gttcggggtg tgctgcaacg acggccgcgc gggcgagaag
421 gccatggcgt gcggcgtggt cggcggcgga ggggcacaca tcgcgaggac gcgcagcgac
481 gacttcggcg cgaggatggc gcccggcacg ccggcgaggg agttcaagaa ggtgtacagc
541 tccggcaact ccggcgggcg gcgcgcgttc gccgagttct ccagctcaat catgcgcaag
601 gcgccgccgc tggagcgcaa gctcgactgc accctcgagg agctctgcca cggctgcaag
661 aaggaggtca agttcacccg cgacgtcgtc accaagaacg ggtcaatagt caagaaggag
721 gtgagccaga tggtgctggt gaaaccaggg tggaagaaag ggaacaagat cacatttgaa
781 ggcatggggg atgagaggcc agggtgccta ccggccgatg ccgtcttcgt catatcggag
841 aagaaacacc ctgtcttcaa gagggtaggc aacgacctgg tgctgaaagc cgaggtgcca
901 ttggtgagcg cgctcaccgg ctggtccttc tcattcaggc tcctgagtgg caagaaggtg
961 agctgctcat ttcaggatga gatcatctgc ccaggatatg agaagatcat caaaggggaa
1021 gggatgccaa ttgccgatca gaaaggagca cggggtgatc taagggtgaa gtttgagatc
1081 gcgttcccga agcagcttac tgacgagcaa cgcgacggtc ttgctcaaat tctgagagga
1141 tgtgcatggg attgatgaga ttgaaatgca aggtccaagt gtatcaaatt ttctcagcct
1201 tgtgttaaac aatcagaatg agtacataaa gagagatgcc cttgtatata caggtataat
1261 atatgatgaa aaccaagtct tctgtggata gtacatgcct ttccagatga gctgtatggg
1321 tttattttg
//