LOCUS       AK063270                1474 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-113-B10, full insert
            sequence.
ACCESSION   AK063270
VERSION     AK063270.1
KEYWORDS    oligo-capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1474)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1474
                     /clone="001-113-B10"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             114..1301
                     /db_xref="Osa1:LOC_Os01g11860"
                     /db_xref="RAP-DB:Os01g0217500"
                     /note="(RAP Annotation release2) DJ-1 family protein"
                     /note="(Rice Genome Annotation Project)
                     4-methyl-5-thiazole monophosphate biosynthesis protein,
                     putative, expressed"
                     /note="mapping to R01-TIGRv4S1-000341F (Chr.1: short
                     arm=6409587, long arm=6416669, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG88623.1"
                     /translation="MAAQASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASA
                     DDGELVVEVMYGVRIVADALVAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRR
                     HAATGGLYAAICAAPPLALASWGMLNGLKATAHPLFVDKFPPEVAAVDASVVVDASAV
                     TSRGPATSTEFALALVEQLYSKNKAEQIAKEMLVRYDAGYTIDEVNSVQWKCNGTPKV
                     LVPVANGTEEMELITIIDVLRRADADVVVASAENAGVEIVARHGMRIVADTTLDEAAA
                     DDQTSSFDLIILPGGTPGAKTMSSNEKLVTLLKKQAAASKPYGAIGAATAHVLEPHGL
                     LEGKKAADQDGGDECESRVVVDGNVITSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGL
                     LFA"
BASE COUNT          293 a          427 c          478 g          276 t
ORIGIN      
        1 agctcgttca atgcgcccgg tgtctcctcc tcccaactac acacccccgc aatctcgctc
       61 gctagctcgc tgatcgatca agctcaagct caagctagct tcggtcgtcg gcaatggcgg
      121 cgcaggcgtc tcctccaacg aagaaggtgt tggtgccgat cgtcgccggc acggagccgg
      181 tggaggcggc ggtgcccatc gacgtcctcc gccgcgccgg cgcggacgtc accgtggctt
      241 ccgccgatga tggcgagctg gtcgtcgagg tcatgtacgg cgtcaggatc gtcgcggacg
      301 cgctcgtcgc cggcggcgac tgcgccgccg ctcacttcga cctcatcgtc ctcccgggag
      361 gggttccagg cgcggcgaac ctcggcggct gcgcggcgct ggaagccatg gtgaggaggc
      421 acgcggcgac cggaggtctc tacgccgcca tctgcgccgc gccgccgctg gcgctggcgt
      481 cctggggcat gctcaacggc ctcaaggcaa ctgctcatcc gctgttcgtg gacaagttcc
      541 caccggaggt ggccgccgtg gatgcgagcg tggtggtgga cgcgagcgcc gtcacgagcc
      601 gtggcccggc gacgtcgacg gagttcgctc tcgctctggt agagcaactc tacagcaaga
      661 acaaggccga gcagatcgca aaagaaatgc ttgtcagata cgatgctggg tataccatcg
      721 atgaagtcaa ctcggttcaa tggaaatgta acggcacgcc caaggtcctt gttccagtag
      781 ccaatggcac cgaggagatg gagctgataa caatcatcga cgtcctgcgc agagccgacg
      841 cggacgtcgt cgttgcgtcg gcggaaaacg ccggcgtcga gatcgtcgcg cgccacggga
      901 tgaggatcgt ggctgacacg acgctggacg aggcggctgc cgatgatcag acgagcagct
      961 tcgacctgat catcctaccg ggtggcacgc ctggcgcgaa gacgatgagc agcaacgaga
     1021 agcttgtcac tctactgaag aagcaggcgg cggcgagcaa gccctacggc gccattggcg
     1081 ccgcgacggc tcatgtgctc gagccccacg gtctgctcga gggcaagaaa gcggcggatc
     1141 aggatggcgg cgacgagtgc gagagcagag tggtggttga tgggaacgtg atcacgagcg
     1201 gaggcaccgg caccgccatg gagttcgccg tggccgccgt cgagaagctg ctcggccgcg
     1261 acgtggcgca gagggttgcg gaaggcttgc tttttgcctg atcgatcttc tgttggtttt
     1321 aggtgatcaa accaatgaaa gttttcataa tgcagatgtg tgatctgtga aagagataat
     1381 tttccttcca agaaaaagac ataaagagtt gtcatttgtc aaaccatcaa catttgttct
     1441 cccataaact tataagggtg ttttcttaat ttat
//