LOCUS AK063270 1474 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-113-B10, full insert sequence. ACCESSION AK063270 VERSION AK063270.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1474) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1474 /clone="001-113-B10" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 114..1301 /db_xref="Osa1:LOC_Os01g11860" /db_xref="RAP-DB:Os01g0217500" /note="(RAP Annotation release2) DJ-1 family protein" /note="(Rice Genome Annotation Project) 4-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed" /note="mapping to R01-TIGRv4S1-000341F (Chr.1: short arm=6409587, long arm=6416669, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG88623.1" /translation="MAAQASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASA DDGELVVEVMYGVRIVADALVAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRR HAATGGLYAAICAAPPLALASWGMLNGLKATAHPLFVDKFPPEVAAVDASVVVDASAV TSRGPATSTEFALALVEQLYSKNKAEQIAKEMLVRYDAGYTIDEVNSVQWKCNGTPKV LVPVANGTEEMELITIIDVLRRADADVVVASAENAGVEIVARHGMRIVADTTLDEAAA DDQTSSFDLIILPGGTPGAKTMSSNEKLVTLLKKQAAASKPYGAIGAATAHVLEPHGL LEGKKAADQDGGDECESRVVVDGNVITSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGL LFA" BASE COUNT 293 a 427 c 478 g 276 t ORIGIN 1 agctcgttca atgcgcccgg tgtctcctcc tcccaactac acacccccgc aatctcgctc 61 gctagctcgc tgatcgatca agctcaagct caagctagct tcggtcgtcg gcaatggcgg 121 cgcaggcgtc tcctccaacg aagaaggtgt tggtgccgat cgtcgccggc acggagccgg 181 tggaggcggc ggtgcccatc gacgtcctcc gccgcgccgg cgcggacgtc accgtggctt 241 ccgccgatga tggcgagctg gtcgtcgagg tcatgtacgg cgtcaggatc gtcgcggacg 301 cgctcgtcgc cggcggcgac tgcgccgccg ctcacttcga cctcatcgtc ctcccgggag 361 gggttccagg cgcggcgaac ctcggcggct gcgcggcgct ggaagccatg gtgaggaggc 421 acgcggcgac cggaggtctc tacgccgcca tctgcgccgc gccgccgctg gcgctggcgt 481 cctggggcat gctcaacggc ctcaaggcaa ctgctcatcc gctgttcgtg gacaagttcc 541 caccggaggt ggccgccgtg gatgcgagcg tggtggtgga cgcgagcgcc gtcacgagcc 601 gtggcccggc gacgtcgacg gagttcgctc tcgctctggt agagcaactc tacagcaaga 661 acaaggccga gcagatcgca aaagaaatgc ttgtcagata cgatgctggg tataccatcg 721 atgaagtcaa ctcggttcaa tggaaatgta acggcacgcc caaggtcctt gttccagtag 781 ccaatggcac cgaggagatg gagctgataa caatcatcga cgtcctgcgc agagccgacg 841 cggacgtcgt cgttgcgtcg gcggaaaacg ccggcgtcga gatcgtcgcg cgccacggga 901 tgaggatcgt ggctgacacg acgctggacg aggcggctgc cgatgatcag acgagcagct 961 tcgacctgat catcctaccg ggtggcacgc ctggcgcgaa gacgatgagc agcaacgaga 1021 agcttgtcac tctactgaag aagcaggcgg cggcgagcaa gccctacggc gccattggcg 1081 ccgcgacggc tcatgtgctc gagccccacg gtctgctcga gggcaagaaa gcggcggatc 1141 aggatggcgg cgacgagtgc gagagcagag tggtggttga tgggaacgtg atcacgagcg 1201 gaggcaccgg caccgccatg gagttcgccg tggccgccgt cgagaagctg ctcggccgcg 1261 acgtggcgca gagggttgcg gaaggcttgc tttttgcctg atcgatcttc tgttggtttt 1321 aggtgatcaa accaatgaaa gttttcataa tgcagatgtg tgatctgtga aagagataat 1381 tttccttcca agaaaaagac ataaagagtt gtcatttgtc aaaccatcaa catttgttct 1441 cccataaact tataagggtg ttttcttaat ttat //