LOCUS AK062258 1667 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-047-G10, full insert
sequence.
ACCESSION AK062258
VERSION AK062258.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1667)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1667
/clone="001-047-G10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1667
/db_xref="Osa1:LOC_Os02g57650"
/note="(Rice Genome Annotation Project) NAC
domain-containing protein 78, putative, expressed"
/note="mapping to R02-TIGRv4S1-001606F (Chr.2: short
arm=35298780, long arm=35301388, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 456 a 353 c 385 g 473 t
ORIGIN
1 atgcctgcca gtggcgcttt cgctgaaatg gctgcagtca cagatactgc agagagtcga
61 ctgaggaaga tgggaatttc tcccttaaaa ctaatgatga gcctttacaa acccaagaat
121 accagccaga gataactcct gtgaaagctc aaggttcaaa tgaggagacc aatggcggtg
181 gttacagttg tgatgttttt tctctggatg agattttgca ggaacctgaa aatgtctgca
241 aaaatgaaga gcagaatgcc attgatgaca agttcactat cgcagagtta tctggatacc
301 caaggcaaga tgatggctat gtaggcgaga atggtcctgt gaattggatt gacccttcaa
361 atggtgataa tacaaactgg cctttgagag catatagtac tcagaaccat gtcaatggaa
421 cacttagcgc cgatggtttc tttgacacgg tgaatggtac caactcatat tcaggtcctt
481 cagataacca gaacctgtat ttgcaagatg atggcttgac ttcttctcat caagtgggcg
541 ataacatgcc attttatgac gcatcatcta atcacaaatg ggtagatgga aaggatgatt
601 atttgaattt gaatgacctc ctctacccgc cagcagaaaa tcaacccctg tttgatgctg
661 gggatgacct gatggcttac ttcgatgcca cggaggatga tttcaaattt gatattatgg
721 gcacagaaga ttctaattct caacttccag acatgtcgaa ctttgtccaa aaggatgata
781 acaacaataa gtttacatta gatgggatct ctaataccgc tttgtatggt gcttcttcat
841 ctggatccca tggcaatatg tatccagaca ctgcagtacc agatatgccg atggatgaca
901 ctgttgacaa aagtttcgga aagcgccttg ccagcatgct gggttcaatt ccagctccac
961 ccgcaatggc ttcagagttc ccgccgagca caggaaaatc tgttgtccca cttagtgctg
1021 tcaacccgag tagctctatc cgtgtcactg caggcattat ccaactcggt ggtatcactt
1081 ttactggtag caccgggcac ctgcagaaga atggagattt caatttgctc ctctctttca
1141 ctgtcgaggg cgacgtctca accaaatcca ttggttttga accggatacg cagatgagca
1201 ccacgccaat ggtgttgcgc agcggcatgt atcttttctt cgtatcggcg atgattctca
1261 tgttgagcta caaagttggg ctgtgtatct acagcaggta agttatagta gtttttgttg
1321 ccccaggctg tttattaaat tgaaggagtc atacagagtc cactcgacgt agagggaact
1381 cctgcgattt ggacagtttg gttctttaca ttgttatagt tggtataccg tcctgacagt
1441 tgaaagatac atagcaataa actctggaat tggagaaact agagttacac gaatttggtg
1501 ctgaaacttt tgttggtggc atgtactgta taatttactc tatttattta tttcacccaa
1561 ttctgggagg ctgtaagcgt tccccgatcg atgtaagctg atctgaaacc tgaatacgcg
1621 ctcttcattt ttcataccca aagggccgag aggcacagtt tgcagtt
//