LOCUS AK061948 1803 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-042-E07, full insert
sequence.
ACCESSION AK061948
VERSION AK061948.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1803)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1803
/clone="001-042-E07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1803
/db_xref="Osa1:LOC_Os02g57260"
/note="(Rice Genome Annotation Project) 3-ketoacyl-CoA
thiolase 2, peroxisomal precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-001588R (Chr.2: short
arm=35075248, long arm=35079328, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 460 a 416 c 508 g 419 t
ORIGIN
1 aagtaatcgg cgctttcgcg agagagagcg atacgaacaa gagaaaatct tctccagaca
61 ccgcggcggg cttccccacc ccatcggaag gaagaagacg accagctcgc gcgctcggat
121 ctcagccatg gagaaggcga tcgatcgcca gcgcgtcctc ctcgcccacc tcctcccctc
181 ctcctcctcc gaccaatcgc tcctctccgc gtcggcgtgc gccgccgggg acagcgccgc
241 cacagaggac ttccgcctac ggggacgacg tcgtcgtcgt cgctgcctac aggacaccca
301 tatgcaaggc caagcgagga ggtttcaagg atacataccc agaggacctt cttactgttg
361 ttctaaaggc tgttctggac aacactaaga tcaaccctgg tgaaattggt gacattgtag
421 ttggcacggt gctaggtcca ggctcgcagc gtgcaatcga gtgcagggct gcggctttct
481 atgctggagt tcccgaaaac gttcctgtta gaactgtcaa ccggcaatgt tcctctggat
541 tacaggcagt ggctgatgtt gccgcggcca ttaaagctgg gttctacgac atagggattg
601 gtgcaggcct ggaatccatg tcagtaaatg ctatgggttg ggaaggacaa gtaaacccta
661 aagtaaatga agtccagaaa gcacaggatt gtcttttgcc catggggata acgtccgaaa
721 atgttgcgca ccgatatggt gtaacaagac aagagcagga tcaggctgct gctgagtctc
781 ataggagggc tgctgcagcc acagctgctg ggaaattcaa agatgagatt gttccggtgc
841 ctacaaagat tgttgacccc aagactggag aggaaaagaa agttgcgata tcagttgatg
901 atggaattag gccagggacc acagcatctg gattggcaaa gcttaaacca gttttccgga
961 aggatggtac cacaactgca ggcaactcta gtcaagtgag cgatggtgct ggagctgttc
1021 ttctcatgag gagggacgta gcgatgaaga agggacttcc tattcttggt gttttcagga
1081 gctttgctgc tgttggagta gatcctgctg ttatgggtgt tggtcctgca gtagcaatac
1141 cagctgcagt gaagtctgct ggactccaga ttgaagacat tgatctgttt gaattgaatg
1201 aggccttcgc ttcgcagttt gtgtattgct gcaacaagct gggactggac aggtcaaaag
1261 taaacgtgaa tggaggcgca atcgccctag gacatcctct tggtgcaaca ggtgcccggt
1321 gcgtcgcaac tcttctgaat gaaatgaagc gccggggcag ggactgcaga ttcggtgttg
1381 tcaccatgtg cattggatct ggcatggggg cagcagctgt gtttgagcgg ggtgactcgg
1441 tcgaccaatt ctcaaacgtg cgccaccatt agcggcagtt ttctaagaga aatgcaaagc
1501 aaagcagtgg tgcaaaatca tcatggtggt cagtccaatg gagcatactc tggcagtaag
1561 atctataccg aaaactaaat gcaggaaaca cgtaatcttc tccggtgaaa ggtgtaacag
1621 tatattgaag atcttttcat gtaacatttt gcactaataa taatttatgc gaataagggg
1681 catgcatgct caatgtttgt tttgtcaagt gttccacacg aaacactgag aggagcacag
1741 tggttgcaaa tgttgaaggg cctgataagg gtaggcctga tcatggataa tttggcccaa
1801 atc
//