LOCUS AK059858 1407 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:006-207-B03, full insert sequence. ACCESSION AK059858 VERSION AK059858.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1407) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1407 /clone="006-207-B03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 116..1195 /db_xref="Osa1:LOC_Os09g23530" /db_xref="RAP-DB:Os09g0399800" /note="(RAP Annotation release2) Cinnamyl alcohol dehydrogenase (EC 1.1.1.195)" /note="(Rice Genome Annotation Project) mannitol dehydrogenase, putative, expressed" /note="mapping to R09-TIGRv4S1-000346R (Chr.9: short arm=13981979, long arm=13983583, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG87172.1" /translation="MEHDGTAALGWAARDASGHLSPFSFTRRVQEEDDVTIKVLYCGI CHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACD SCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLL CAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKREEA LERLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPA APLQLPAIAIIDGGKRVAGSGGGSVAECQAMLDFAGEHGIAADVEVVAMGDVNAALGR LERNDVRYRFVIDVAGTLHAAAAPS" BASE COUNT 237 a 420 c 503 g 247 t ORIGIN 1 ctatttaatc ctgtatcacg cccagattcc tgagtccaaa accaactact gatagtctaa 61 tagtatcgat cactgaggaa gaagagcata gcaaaagagt ggtcgatcgt catcaatgga 121 gcacgacggc acggcggcgc tcggctgggc ggcgcgggac gcctccggcc acctctcacc 181 gttcagcttc acaagaaggg ttcaggagga agacgacgtg acgatcaagg tgctctactg 241 cggcatctgt cacaccgacc tgcacaccat caagaacgag tggggcaacg ccatgtaccc 301 cgtcgtcccc ggccacgaga tcgtcggcgt cgtcgccggc gtcggcgccg gcgtgaccag 361 gttcaaggcc ggcgacacgg tgggcgtggg ctacttcgtc gactcgtgcc gcgcctgcga 421 cagctgcggc aagggggacg agaactactg cccgacgatg gtgatcacgt cgaacggcac 481 ggactacggc ggcgccacca cccagggcgg tttctccgac gtcatggtcg tgaggcagga 541 ctacgtgttg cgcgtcccgg cgagcctgcc gccggacggc gcggcgccgc tgctgtgcgc 601 cggcgtgacg gtgtacagtc cgatggtgga gtacggcctg aacgcccccg ggaagcacct 661 cggcgtggtc ggcctcggcg ggctgggcca cctgggcgtc aagttcggca aggcgttcgg 721 gatgaaggtg acggtgatca gctcgtcgcc ggcgaagcgg gaggaggcgc tggagcggct 781 cggcgccgac gcgttcctgt cgagccgcga cggcgagggg atggcggcgg cggcggcgac 841 gatggacggg atcatcgaca cggtgtccgc ggggcacccg ctggtgccgc tgctgtcgct 901 gctgaagccc aaggggcaga tggtggtggt gggcgcgccg gcggcgccgc tgcagctgcc 961 cgcgatcgcc atcatcgatg gcgggaagcg cgtcgccggg agcggcgggg gcagcgtggc 1021 cgagtgccag gcgatgctgg acttcgccgg cgagcacggc atcgccgcgg acgtcgaggt 1081 ggtcgccatg ggcgacgtca acgccgccct cggccgcctc gagaggaacg acgtgaggta 1141 ccgcttcgtc atcgacgtcg ccggcaccct gcacgccgcc gccgcgccgt cctaggctcc 1201 tagcaatgtt gccttcgtgt caacgtgctt gcgtgtcatt gtgcggtcgt gtgtgtaacc 1261 gtgaaaggag aggcgtttgg taatggagca ataacgttgt ttttggaccg tgatggtccg 1321 tgggcttgtg atgggttatg tgggccacct cgagttgggc ccttctcttg tccgattctt 1381 tgtccaaaga ttgaaataag ttcatct //