LOCUS AK058276 1800 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-013-C05, full insert
sequence.
ACCESSION AK058276
VERSION AK058276.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1800)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1800
/clone="001-013-C05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 218..1453
/db_xref="Osa1:LOC_Os05g04340"
/note="(Rice Genome Annotation Project) glycogen synthase
kinase-3 homolog MsK-1, putative, expressed"
/note="mapping to R05-TIGRv4S1-000101R (Chr.5: short
arm=1952135, long arm=1955857, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG86642.1"
/translation="MASVGVVRSSLGFQNETSTSGDADRLPNEMSNMSIRDDNKDIDD
IVVNGNGTEPGHVIVTSIDGRNGQAKQTISYMAERVVGHGSFGTVFQAKCLETGETVA
IKKVLQDKRYKNRELQTMRVLDHPNVVSLKHCFFSKTEKEELYLNLVLEYVPETAHRV
IKHYNKMNQRMPLIYAKLYMYQICRALAYIHNTIGVCHRDIKPQNLLVNPHTHQLKLC
DFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLF
PGDSGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPAEAVD
LVSRLLQYSPYLRSTASEALIHPFFDELRDPNTRLPNGRFLPPLFNFKPHELKGMPME
FLVKLIPEHARKQCAFVGW"
BASE COUNT 481 a 432 c 427 g 460 t
ORIGIN
1 ctctccgaat cctcccccgc attccgcgcc ggagctgagg agggacagcg agccagcgag
61 ggaggtgggg caatccagcg agcgccagat cgtgccgcca gccccgctcc gtcctctctc
121 cggcgaccct ccgccccgcc tgatcccgtg gtggatcaac tacaactcat ctttaggaaa
181 gcctcttgaa cattagcctt gtgtgccttt caacagtatg gcctcggtag gtgtggtgcg
241 ttcttccttg gggtttcaga acgaaacaag tacaagtggc gatgccgacc gacttccgaa
301 tgagatgagc aatatgagta taagggatga taataaggac attgacgaca tagttgtcaa
361 tggcaatggg acagaacctg gtcatgttat tgtgacaagc attgatggaa gaaatggaca
421 ggctaaacag accattagct acatggccga gcgtgtcgta ggtcatggat cctttggaac
481 tgttttccag gccaagtgcc tggaaaccgg tgagactgtg gctataaaga aggttcttca
541 agacaagaga tataagaacc gtgagctgca aacaatgcga gttcttgacc acccaaatgt
601 ggtgtcacta aagcattgtt ttttctcaaa gactgagaag gaggagcttt acctcaattt
661 ggtgcttgag tatgtgccag agactgctca ccgtgtaatt aaacattaca acaagatgaa
721 ccaacgcatg ccattgatat atgcaaaact atacatgtat cagatatgca gagctttggc
781 gtacattcac aacaccattg gcgtgtgtca cagggatatc aagccacaaa atcttctggt
841 gaacccacat actcatcagc tgaaattatg tgacttcggc agcgcgaaag tcttggtaaa
901 aggagaacca aatatttctt acatctgttc aaggtactac agagctccag agctcatatt
961 tggtgctact gaatacacaa cagcgattga tgtttggtct gccggttgtg tgcttgctga
1021 actcctcctg gggcagcctc tattccctgg cgacagtggc gttgatcagc ttgttgaaat
1081 catcaaggtt ctgggtaccc ctacacgaga ggagattaag tgcatgaacc caaattacac
1141 cgagtttaaa tttccgcaaa tcaaagctca cccatggcac aagatcttcc ataaaagaat
1201 gcctgctgaa gcagtcgatc tcgtctccag gcttttgcag tattcaccat acctccggtc
1261 cactgcttcg gaagcattga tccatccctt cttcgatgaa ctccgtgatc caaacacccg
1321 cttaccgaac ggccgtttcc ttcctcctct cttcaacttc aagccccatg aactgaaggg
1381 tatgccaatg gaattcctgg tgaagcttat ccccgaacat gctcgaaagc aatgcgcgtt
1441 tgtaggatgg tgatttctga ggtcagcatg aaaactagtt cagaatttct tcaccgtcct
1501 ccattagaaa gcagagatga accctgtgtg cagccatttg ggaaagctgg tgcatatgga
1561 agtggaacta catttttttg tccgagattc tgacgccgcg tattcttttc ccccctccca
1621 ctttgctgct gccggtgtaa ccaaaaaatc atccacggtt ctgtaaagtt gatgaagaag
1681 agtgtaaaat caggttgaaa actgaattcg atcggtttgt caagattgta gcaacatgca
1741 aggaaggatg ttgcacactt tgtatggcaa tgttcgttcg gtccaaatat ttggacatgg
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