LOCUS AK052608 2113 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
library, clone:D630004D15 product:unclassifiable, full insert
sequence.
ACCESSION AK052608
VERSION AK052608.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2113)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D630004D15
FEATURES Location/Qualifiers
source 1..2113
/clone="D630004D15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D630004D15"
/db_xref="MGI:2422265"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="kidney"
misc_feature 1..2113
/note="putative"
/note="unclassifiable"
BASE COUNT 671 a 429 c 366 g 647 t
ORIGIN
1 gtgcaagtat ctctgttcat aaatcagacg aagcaacagg ttcactgtgc agtattctat
61 ttgaagccta ttacataaga catccaggca aagctctttc cactttgaaa ggccctaaca
121 tattgtggaa ttgtcctaac tctcaaggag acacaggggg tttgaaagac taagtgcaag
181 gaccaaggtt gcccggattc cctttagcat gaagaagtta cagacattca aactccagtg
241 gggaataaaa ttacttttta acaaaattcc tgacaaattt gaaagcaaaa tacacaacag
301 aaacaccaag ctacatattc atgggtcttt cgtcaaatag aatttatttt cctgagtaga
361 tttgttgaga ctcttaattt cacttctcct gaagatacac caaccccaaa ccctggtaat
421 aaccctgtgt atcccttctc agctttttat attcaatttt ctgttgcctt tcaaaactca
481 aatccattcc taaattttgt gtattaaatc ctacaagtgt ggtcaagtct tcttggaatg
541 ataaaaattc tcaagtactg accaactaaa acttcacttt gattaatggt taacatgcaa
601 aaggaagccc acattgaact ttgacatttt ctcagcacca cgtcagagaa aggccacttg
661 actgttgctc taaacagctg ctggccatac tctcagcgtg ttctaagttg gaggtacaat
721 aacatgcaca tggggaaaaa atgactccta gtagggggaa ttaaagtaaa ttggctggtg
781 ttttaatcaa tagactttac ttaagtgcaa tattaaataa gcgcctcatc tgcaatgtgt
841 taggtacaca tttccataca agattttgac aactctccta tgattttggg gttgatggga
901 aaaagcacta cgttttgaaa tgctattttc taaataaaac ctgtatgccc tatctctatt
961 cccatcactt tctcccttct caacatattc tttttctatt ctcaaactgt gtcctagcca
1021 ttcttacaac acacacacac acacacacac acacacacac acacacagac agagactcag
1081 agagagacag acagacagac aaagtgagag acagaaagac agatagaata agacagaagc
1141 agcaactgag acagagacag acagacagac agacagacag acattttaag aaaataattc
1201 ttttttaaaa aagcctacaa gaatatcact gagttggttt attttgacca tttattcctg
1261 ggcatagggc ttaccattaa gtgtgattaa tatacccagt gacactccat tccattggag
1321 aaaactaatt ttttttcctt tgcaagtggg tatcaattgc agacaggctc ttcattggga
1381 gtggaccctt gtctacttcc tgtttgcagc gctgggaccc cccatctggc tcaaatctat
1441 acattctatt tctgataact gtttcctaga attccagcta agggattccc catatccatg
1501 cagtatttta agaattcttc gttgtaaccc gtgtgaataa tatataattt aaggaattta
1561 atgctgtaga gtggaactgg aatatcgagt gcctttacct cgggattgca gtattccagg
1621 ttaaatccta tcctaactag ctgcgtattc accgctggtc atctattcgc tgacacaatg
1681 ctttactatc tctgtagaaa acttgtatta cccatttaat atttcataaa aaatgtgagg
1741 aacagtatca ccagtctgac ttatacaatg cttatgtaac gacactagtc agttaatctt
1801 gaagctttac attttctcca tgctaccgag tagcaaatgt ctgaacatgt tgaatcaagg
1861 ttgggttaga gaatagctat gcattcctga cacgtaagga tgaataagca actgagtaag
1921 gaagcttggg taaatctgat ttctcagtat ttctatgtgg cttttgaatg ataaaacgat
1981 ctccactttt ctaaagacaa agctttctct tctacttttc acattagctt ctgtaaatgt
2041 tttagttgaa aatttaatgc ttgtacagtc catggcaatt ggaatatata ttatatgtat
2101 atggaaaaag ttt
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