LOCUS AK047163 1508 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:B930030E13 product:unclassifiable, full
insert sequence.
ACCESSION AK047163
VERSION AK047163.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1508)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B930030E13
FEATURES Location/Qualifiers
source 1..1508
/clone="B930030E13"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:B930030E13"
/db_xref="MGI:2412704"
/db_xref="taxon:10090"
/dev_stage="10 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="cerebellum"
misc_feature 1..1508
/note="putative"
/note="unclassifiable"
BASE COUNT 344 a 433 c 357 g 374 t
ORIGIN
1 gggggctgtc tgtggcctgc ttgcacacgg tcaccatgtc agcaccaaga gagactccag
61 gaagcctaga ggaccagtga taaagactcc atgaggcaca tgggcccctc cttcagaagg
121 aagcaggctt tcctgatgtt tgccttaacc tgaccttact gcacataaca caaagaggag
181 gaagggccac cctgctcatc tgtccagggc cgtggaaacc cagagagcac cgtggcctgt
241 gcctcttcgg gctggatgtt cacaccacac cactgagcag tgcagaccag agcagagtga
301 gcagagtgga ggcagtgacc tggaggtcac attcacttgc ttcctggcag ccgccccagc
361 tccagctgtg ttgcctccct ccctccctcc ccttcctgtc tctctcttcc tttcctcccc
421 ctcagcctcc ttcccaccct ttttttcttt tgctggcttc tgttctttct ttccatgagc
481 agagagtttc caggcttggc ccacagccag cacatgtgga caaaagactt agagggagac
541 gtcaccttcc atgctgtcca cagggccggc acagcctcgt tagtaaggct gctcccctgg
601 ctgctcccaa ggttctggga aaggggtgct tttaatccct tcgattaaaa gcagaggatc
661 tggatggttc tggaccccag gctctgattc caatgaacct gagagctgca ggccttctgg
721 caagttcttc cctatgcccc aggcctcttg gttttaccag caagtttgca agaccttgga
781 aaggatgacg tgaggctgca cctgtgggac actctggcac attctgggag aagtgctcaa
841 caaatgtctg ctgagatttt ttaaagtgag cctcaccctg gcaagtgata ctagcattga
901 tgatgcaggg tcctgaattg ataaggactg tgcactcgac tcatttaggg ggctgattgt
961 tcccaagttc tctgaaacct aaaatactct ctcacaccag gctgggggtg tagttcaatg
1021 ctagagggag gacttcccta acactaacaa tgccctagga taaatcccca gcgctataac
1081 acccaccctc caccctcacg ctcacacacc caccagcaaa ctctcaagca aatgaccgaa
1141 gcggcaacgt gatctgagaa cgtttcggtt attccaagag ctgagcccct ttcttctgca
1201 ggagaagcaa gacacccagg acacgctgac cctcagcctc tgttcgccag gggtcaccga
1261 gcctgctgtc tgtcctgacc tccccagcca gagctatttt tcagtttctt gtgggctaag
1321 gcccggatct gtctgtttac tatcttagcc tggtgttttt gtactcaaaa gtttcgtaac
1381 gcctgcgagt atgttcttct tcactggcta aattctgaga tatgaaaaat ggtctttcac
1441 ctacaattta gttaatctga ggcagcatga atggatttga aattgaccaa taaactcagt
1501 caccaagc
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