LOCUS AK046380 2828 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male corpora quadrigemina cDNA, RIKEN
full-length enriched library, clone:B230378D16
product:unclassifiable, full insert sequence.
ACCESSION AK046380
VERSION AK046380.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2828)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B230378D16
FEATURES Location/Qualifiers
source 1..2828
/clone="B230378D16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:B230378D16"
/db_xref="MGI:2411783"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="corpora quadrigemina"
misc_feature 1..2828
/note="putative"
/note="unclassifiable"
BASE COUNT 806 a 582 c 563 g 877 t
ORIGIN
1 agaaacaacc tcagaataga aagcattccc ttaagtgaaa tcgtggtagc ttaaaactga
61 tatacaactc cccaatatta gacttgactg gctttaaaaa gataagcaag tgaagttagt
121 gaccatgccc ataacccaat actgaaaggc ttgggtgcaa gagctctgag cttgaggcca
181 gactaggcca cattagagaa actgtctcag actaaaagta atgaaataaa ttatgtccat
241 attaaatttg tttggcatat cgaatttgtc cagaattatt tgttttccca aagaatagcg
301 aaactttatc acaaactagc aactctcctc aaacttctac cgcctgtaaa taaataatta
361 tgaaagagca actgtgtgca aaagcatagg acattactgc ttcacagcag agcccattag
421 gactaaagat ctcattgtgt tcataaaaac agctggattt ctctgagctt gtttgtttgt
481 ttgcttattg ggggatggcc gtcgctgtcg tggcactcaa tatgcagaac aggctgacct
541 gaacttagag atctgactac ctctgcatcc taagtgtggg gattaaagat gtggaccacc
601 acacctgact cttgttaatc ttttaatgat tctgctcatt gttgagctgc caaaaaggaa
661 aaaaaaatca atagtgacaa actgaatgaa gtaactgaaa aatataattc ttaccacttc
721 catctattct ggtaatttgt gttttcaggt ttcctgccag tgaaggattg cataagtgtc
781 tgatgtttgc atctgccagt tacagttttg aaaagtaatg acagtcaacg tgtaatagct
841 caacacacac cattaattcc agtgttgagg tctccagtag ttacagctga ccacctttaa
901 taaatgacca ggaagatact tgtcaaattc acagcttttg tgaagttaag ggacatcaac
961 ttagtttgca tcaactaagg gacaggtgct agcccaggac tgcaggagca ggttactcaa
1021 tctttttcaa gtgctcctcg ccatttaaaa acgaatactt gagggaggtc agtcctgcct
1081 cttagcacac atttcagaat tgttgcatca tctaaaaaaa actcctcaac atgcaggaat
1141 gtgtaatttt cgccaactcc aagcttcatc tcttcaaaga ccaagctgac caaaacctgc
1201 cacctaacac acacatcaca gctggaagtg tgtcctatgg gaaggaagag gactatctga
1261 gattttttgt tgttgtttgt ttgtttgttg ttgttgttgt tttaaatgta gcccaggatg
1321 acctgaaagt caaaatcctg tttctgtttc cccagtgcta aattacattt cgaacccttg
1381 ccttctcccc actatccaag tgacaacctt tatcattata catatacaca tggggtgtgt
1441 gtgtgtgtgt gtgtgtgtgt gtgtgtgttg gggagagggg taccatggca ggcttcttga
1501 tcagatgaca actttgtgaa gtagattctg tccttccatc ttacatgact tctaggcatt
1561 gaattctgat catcaagttt gaacaggaaa acctttagac actgagccag cttgttgctt
1621 tcctaaatag tattttgttt aaagatttat gtttgattat ttttataagt tctgtgtaaa
1681 cttggaggag gtataagcat gcgagtgtca ggagtccatg aaggccaggc atgccaaatc
1741 tctctggggc tgaagcgaca ggcagttgtg aacacccagt gtggatcctg ggaacagaac
1801 tcaggtcctc ttgtaagcac attacgtgct cttggactat tgagctacct ctccagacct
1861 tgactcccat gacactttct tgttatattt tcttgtattt taaattctgt gtctatgtgc
1921 tagtatctgt gtgagtacat gggtgcaggc gcccatggaa gtcagagaca tcgaatcccc
1981 tgaaactaga gtaaaagcag ttgggagcca gctgacctga gtgctgggaa ctcaactcag
2041 gtcttctgca agagcaatac aagctgttaa ctattgagcc atctctccaa cccctcagct
2101 gaaactttga aaggacactg cagccttatg gaggaagaca taatatatag tttgatggat
2161 aaaacatata gaattgcttt gaatataact gatcaattgg tatgggattt atgtttatga
2221 tgtagttaat taatgaagcc taatgtagaa ggtaaatgtg tggcaggcat cacaatgttc
2281 agctatgtgt gaaccctgca aactacagta gtgcactgaa agtgtcaaga gaggtagaga
2341 ggtgagctaa gcccaattca tacaaggcct gtgataaact gtatagaagt tcagtttcat
2401 tgcaactatg gagggaagct atcaaggtgt tttgttgtta tttttgtttc tgttttttct
2461 aaacgggaac attttattca cattaataaa agcccagaat cttttatctt tctggatcat
2521 ccttactgta tttcttctca atgatcacaa gatgaccatt ccacaagaaa gtgataacca
2581 gtttggctag ttttgtcttc ttttaaatat aatatttcat tacttctttg agaatttgct
2641 atgtattttg atcatgtcca cccctctctt tcctccaact ccccagatcc accttctcct
2701 tcctctgctt tatgttcttt tttaaacttt atattgatca tttgtgaatg tcatgtcatg
2761 caccccaggg ccactcatct ctcagtccct tcccaaccac cctctgcctt tgcagcctcc
2821 cccccccc
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