LOCUS AK042995 2826 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:A730046G19 product:unclassifiable, full
insert sequence.
ACCESSION AK042995
VERSION AK042995.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2826)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A730046G19
FEATURES Location/Qualifiers
source 1..2826
/clone="A730046G19"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A730046G19"
/db_xref="MGI:2408109"
/db_xref="taxon:10090"
/dev_stage="7 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="cerebellum"
misc_feature 1..2826
/note="putative"
/note="unclassifiable"
BASE COUNT 630 a 686 c 730 g 780 t
ORIGIN
1 tttttttttt tttttttttt tgctgtgttt tggaggcttt tctatgttgc ctgggtgggt
61 acacagatgg tatgtttagc caaagcatga ggggtaattt ggaaataaat ggaagtttga
121 gtctgtggac acatctgatg catttgtgtg ctctgtgtat atgtctgggt ccgtgtgaca
181 gacaaccaaa gcttgtatgc cttggggtcc ttaggcctct gggttggaac atggctgaca
241 ctcacctggc agtctttgac cttcttggga gtaggtaggc cagaggagta gtgatcgtga
301 ccggtaatga gaacacagtg tcccaagtaa tggcaaaaga agctttaacc ccgggaggag
361 atggacgggg tcagacccag cccgcttcag gctttttgaa gcccacaggc cttttcaggg
421 ccggcctgga tccctaggga gacaagccct catctccaaa tttgaaaatg tctgcctacc
481 tccacgtcta cccctaattg gtgccaattc tgtccacttg gccatttaag caaaacaaat
541 ctccacgtag cttggagtcg acccttatca ggagccggtc agggtgtgaa cgggctgtgc
601 tgttgggcag ctggccagcc aggttaacag cctcagactg gggctggtgg tgtgtccttg
661 tgctggcaaa tgctagtgtg gtatgctcag gacctcacag actgagtttc caccgtgaca
721 agggatgaaa ccagcaccca gtctctcttc cctctccccg ctcttccctg ctacttttct
781 acttctatta cagctctcat gccccaggca gccaggaagt ctcccctccc ttccccctct
841 ttctggtggg gctcaggacc tctcagagat gggagagttt aaacacgtgt tctctccctc
901 tctgcacccc acccaccttt ggcttgcaga ctgctgcaag ctgttttcct ccccagaaga
961 acactgcagc agaaagcagt aaacactccg gagtctccca aacactcgct cagttggcta
1021 gagtgccgcc accggtagac gggtagatgc tgctcaggtg agttcagctt catgggtagt
1081 gtaggtgcca ctcagggaac aggaaggtct ttgggtctgg gcgctggacg aatgaatgtt
1141 ctttgggact tatttatctg cttcttgcca tgtcacagtg ctgtgtgggg gtctggtaga
1201 acttccatag gaatcccatg gaggtagtag aagtgggata gaaaaggttt tttcctgcgc
1261 tggtgagtca caaggatttc atgagtgaaa tatccttccc tttacttcac agtggtcccc
1321 ataacattac tgtcgtaaca ttgggtccca agtatgaacc acagtactgt gcaaatggtg
1381 gcagggagga ggagacacag tttaaaaact atgccgagcc tggagagatg gctctgcagt
1441 taaaggctgg actcacaacc aaaatgacaa agcctcaatg tccactgatc taccaaccct
1501 tcttttgaag tgccttccat tgccctgggc ttccgggatc tgatttggaa gagtggggag
1561 ttgtcatccc cagtgaaagc tctgctttca gccccccacc cccctcagac tttctggaac
1621 tttctgctag cccctatctt cttaggtaaa aatgcatctc tgtctcctcc atgtcatctg
1681 gctttttatt cttccctggg gacaggaggt ggtatgggaa cccttgcccc aggcctcctc
1741 tgtggtattg gatatcatta ggtacattgt cacatcagct taatatttag tccctaggtt
1801 ccgcatcgat gcctctcggt tgattcacac aaggctcagt gtagcagtct gcttcaaaca
1861 ttaaaactat ggtcctaggg atggggaagg agggacaggg gcagggccac ctcagagtcc
1921 agcttagggg tgtcctggcc agtcacccaa gtgtgtgttc cttcctgctt tgatccagtt
1981 ttgagatgtc tgttgtaagt ctagctggtg ccggggttgg gaaggggaag gctacggatt
2041 aagagccagc gaggcagact agtatccagc aattttgtac actctaagca gcaacattgg
2101 gtttcttttt aaagcaatct ggattttggc cacctcccag gaaatccgga tgtgtgtggc
2161 gagatgtggc tcacgcctgt ttggtctagt agtccggctt ctttgccaga aactctctgt
2221 gaagttccca gcagctgggc cgcagaggta catgaaaggc ctatccaaat tccaggcaaa
2281 tgaaagaatc tgtgtcatca ctgatacact cctgatgaca gcagctacct gggtgcctgg
2341 tcgctctctg ctgctgttct gtgtgcgtct ttcctttgca ttttgctgtt actgcgccta
2401 ggaattttct tggctcctat gacgcagctg accatggcag tggatgttcc tgaatttctt
2461 cccattatta ctgtgtcgga ttggaatgca aatcttaaaa aagaaatttt atcatggttt
2521 tccactacta taaaagtagt aacaagccag gcatggtgac tcatgtctat acttctgctg
2581 ctcaggaggc tgagacagga ggtttgccat gacttctagg ccagcctggc ctacagtgtc
2641 tgactgccat ccttcaaaaa ggaaaaaaac gggctttggg atatggctca gttggtagag
2701 tgagtgccta gcatgcacaa ggctctgggt tcaaacctca gcccgtcaca tacctgtctt
2761 gatgatgtat ccctgcaatg tcagcatttg ggaggtagag gcaggagaat cagaagttca
2821 aagttc
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