LOCUS AK037943 3223 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A130066A16 product:unclassifiable, full
insert sequence.
ACCESSION AK037943
VERSION AK037943.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3223)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A130066A16
FEATURES Location/Qualifiers
source 1..3223
/clone="A130066A16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A130066A16"
/db_xref="MGI:2402381"
/db_xref="taxon:10090"
/dev_stage="16 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
misc_feature 1..3223
/note="putative"
/note="unclassifiable"
BASE COUNT 885 a 599 c 779 g 960 t
ORIGIN
1 tgccagcact tgggaggcag aggcagggtg aatctttgag ttcaaggcca gccagggcta
61 cacagagaaa ccatagaaca aaataaacaa aacgaaaacc taatctttct agaaaaacga
121 acataatttt agatacttta agtgtcaaaa gtcaaaagca attagtgaaa aaaaccgaac
181 gattcatata tttttataag cactacttca tgagtttgaa agtttttcta ttttagtcat
241 ttattcttaa gagttgtttc attgattgtt ttaattttaa aataacacat gcatacttca
301 aatatttgta tgtgtgtgta tgtacctctg tgtgtgtgca tcacatgcat gcaggaactg
361 ttggaggtca gaagggacat tgggtcccct agaactagag tcacaaatga tacagatgat
421 tgttagccac tgtgtgagtg ttgagaactg acctgggtcc tgggtacgaa cagtaactgc
481 tcttcactgc tgagtcattt ctttagccac cctgtttgtc tatctgtctg tcttgtctgt
541 cttagtgtgg caatgtctgt cagagtaggc ctgaataaaa gtaattttaa ctgtgtaata
601 ggcaagccag aaatgagatg attttaggaa taagaaggtt atgttgctgt ctaaactaca
661 tgaatataaa acagtttatg accccaacta taatatattg atttatttgg aattgtctct
721 ggagcactgt gatagtttga ataagaaatg cccctctttg gctaggaatt gaaacgctga
781 gtcctcagct ggcggtactg tttgggatag tggtacagcc ttcctggagg aagtgtgtcc
841 ctggggtggg ctttgggaat ttatagctct tttcatttgc agttccctct ctctacttca
901 tgcttgtggt tggagatgtg atttctttgc ttcctgctct ggttactatg cctgcaactt
961 actgtcacgc cattcctgtg tcatgacgga tgggctctta gccctctgaa accctaagcc
1021 ggaataaatt tgggtttttt tttcccttta agttgctgtt ggtcatagtg gttttttttt
1081 tggttttgtt tttgtttcga gacagggttt ctctgtatag ccctggctgt cctggaactc
1141 actttgtaga tcaggctggc ctcgaactca gaaatccacc tgcctctgcc tcccgaggtc
1201 atggtgtttt ttaatttctt atttttaaaa tttattttat atgtatgggt attttgcttg
1261 cattctcaga tatgcgcacc acatgcattc ctggtgtggg atggatcccc ctgaactggg
1321 gttgcagaca gttgtgagct atcatgtggg tgctgggaat tgaacctggg tcttctagag
1381 gagcagccag tgcttttaac ggatgagcca tctatccaac ccccagtcat ggcattttat
1441 cagagcaaca gaaaagtaac taatacactc accaagtaaa tttaggaaca aaagtgttac
1501 tacttgtcca gtagcattta ttttatattg ttgaggaagt aacatcttgc tattttgttt
1561 gcctgaggta acttccaact gctgggttca agcatccttc tgcatctgct tcctgagtag
1621 ctgggtctgt cggtgcatgc cacgatgact ggcaagagag tagtcttaaa gcactctcaa
1681 catcagtaaa atccttgctc agacccacag catttgtata ggtataaatt acagtcatct
1741 atctgctggc aacaagctgt ttgcatttaa gatctacaga aatagcaaca aaagaatgag
1801 gcaagtcaac acaattagaa attacaatat tttttggata cccttggaga tacctcccac
1861 cctctacttt ggagacatct ggttgcgaat gacagtaatc cagaagaagg aagcacacgg
1921 cgctttttga gagagggttt gctaggttcg ggagtggtgt gtggatgaga agttgacaga
1981 gagctgcact gtcaagcaga ttgagagtag gctgggtggg gggtaaagca gaaagctggg
2041 gtatagctcc ccaccatctg tgcaagagtg ttgctaaggt accacgaacc aaactcctaa
2101 ggatcgaagc tgtcagaatg gtcagattgc tttctcatag ctgggaatgc tggacacggg
2161 accacagagt atagttcata tacaaggcgt tgcagaatgg tctttagttt gggagatctt
2221 tcagctcttt gataagaata ggtttgaaag gagtgataga gaggcccaag ttaaccatca
2281 ggaagtggac ctcaggtgaa agtactaggc tcaggcttgg tgaattttga gtggacggag
2341 gctgacgacg ggggagtcag gaacctggct gaagggtata cttaatctct tatgggatat
2401 ttgctggtcc attgggacta gaggtctaca gtcttctata acaaacattt tttgagattg
2461 tgtgttttag ttacttttgt gaaaaaaata ttatgaccta gacaagttat atatagaagg
2521 aaggtttgag catacggttc cagaaggtta gagtccgcca tgacagggca aaggcatgtt
2581 ggcagaagtg gaaagcttag actggaacgg caggcgtagt gatttaaaac cacaagcctg
2641 ccccctttct ccagtaaggc cacacctcct aagtatatcc aaacagtgct actgactggg
2701 gaccaagtag tcaaaccttt tagcctctgg ggaatattct cattcagatc aagccaccat
2761 accgaaaatt acttgtgtct ggaattcaga agatggcgtg accagagaca ctaaaaggga
2821 aactgtcacc tcctgtgagt aaccctatca gcctgcagta ccagaaacaa cctcagacca
2881 atcgtggtca gtgtgtggct tggtggatgt ctccttagct gattaccgga agtttgcttt
2941 tggggactgg gtgtgacttg aaataagttg gtgatttcag gcaggtttgg aattcagagt
3001 attgttatta aaaggaataa aagcaggcag aggtggtaaa tgacagatgg tccaaagccc
3061 cgctctcatt tgaaaggatt tagagcagta tacttggatc tgaaaagaaa gagggctttt
3121 gacagcattt cagtagctgt ggggttttag agacagtcca caaataaggt atataagcat
3181 tatttcagtc agtccgtctg gcagaagtgt ttcacagacg atg
//