LOCUS AK037738 2884 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A130044I18 product:unclassifiable, full
insert sequence.
ACCESSION AK037738
VERSION AK037738.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2884)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A130044I18
FEATURES Location/Qualifiers
source 1..2884
/clone="A130044I18"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A130044I18"
/db_xref="MGI:2402189"
/db_xref="taxon:10090"
/dev_stage="16 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
misc_feature 1..2884
/note="putative"
/note="unclassifiable"
BASE COUNT 823 a 501 c 648 g 912 t
ORIGIN
1 ttgtgggcaa tttcaataga gttacagttc cattttgtat atttttgatt tgtagttagt
61 ataacacaaa acctatggat tcagaggctc agttctaatt tctcttcctt gatgttacaa
121 gcacttcatc cctgagcatt gccctttttt tctgactgct ccaaagtcta gagcactgga
181 cacatttttc aatcagtatt ttgtcctatt ctgaagatgc agttctgatg caacttgaca
241 tttgttttgt tttgttttta ctgcaatgga tatgttttcc actggatttt gacttcagaa
301 gtcaactagt gatgtctttt gaagtaatac aacttttccc tgaagagccc taaaggatga
361 attcacatct ttggtattct gtggtatctc tgggacatgg tgggagtgag tgtcattcct
421 tgttttagtt tactgtgctg agggctgagc ctttactact ctgggttgaa atgttccatc
481 agttgtcatt tcttcatgtg ttgcctcgga tctgcttttt ggtttttttt ttcattgaaa
541 cccaattggc ctattgattt taagcattct atgctgtcta gcctgtgcta gacattttcc
601 catctgtgct gttctctgat ttattttaga ttatttctac aattctatca taagtttccc
661 agattatctg ttcagctgtg gctagtctat taagaaacac atccatcatg tcttaaatgt
721 caatgaattt gcatactttc attttaaatc ttgcagctat ttgaaatatt tgcttaattt
781 tgaaaacgtt ccttttaatg gttttgtatt ccatattcat tttaaagatt ctaagtttac
841 ttctgtaaac gaatgcaaac tggaaattcc ctaaaaccag acttatttta tgattaggac
901 atatcactct agaatgtata gcaaaaggag tgtaactcag gacaccacag aggtacttgc
961 atgtccatgt ttgttgctgc actatacatg ataactgatg catggacaaa gcctcggtgt
1021 ccatcaatag atgaatgaaa aaaagaaatt atgtataata tgcatatgaa tagtgggatg
1081 ttattcagtt ttctcaagaa gaatggactc atgccattta tagagaatga gagaaattag
1141 agatcagtat tttaaagtaa gcaaggctca gaaagacaaa tattgtgttt tctctcatat
1201 gtggaagata caagatacag aagtagtgtc tgtgaaagaa gaagagaaca taaagggaaa
1261 caagagaggg tagtagagta cattcgacaa taagcagagg gaaggtccca gtcaggagag
1321 gttgatgggg gacagagacg gaactgaagg aggcaaagaa gagcaaatca ctgagatgcc
1381 tagatatgaa aatgtcatga ttaaattctt catatactaa ccaaaagatt agtatttaac
1441 tcaatatcca aagtagtagc tgatatggga tttttttcca tgtgacttct gctatatctt
1501 gcttttgtat actccgagtc tttgtaagaa cagtgttcct ggatatttgt gggcctttgt
1561 gacctccagc ttgatgtaga gtcttctgtg gagaagtgat gttttctaca gcttgaggca
1621 ttaacagctt tgggacattt taaagcagat tgtgaggggc tggggatgta tagagtgctt
1681 gcctagcatg ctagaggctg ggtttacgcc cctcccccaa gaccaacaaa ccgtcagaca
1741 aacaatattt taaaaattta taatgagcaa gggaacccag agccagaaag tcaaaggcca
1801 catgctttgt ctcataggtg gctcctgact caaaactgtg tgttagaact gtgtgttagg
1861 cttggagaac caatagaatc caggaagcta gaaaagaact atgagaggaa ggaaggggtt
1921 ctgggagggt gttgtccacc acagagtgtg aagggaaagg gagaaaggga gtgggaggtt
1981 tacgtgggga tgggaatgga agggtggggg ggacaggagg gaaagcatga acaacaagtt
2041 gtgttgtgag gttgtctggc cacatagtga cttgctaaga attttatggg aggcctcacc
2101 tacagttatt tgattacaga tttttaagat gtgctcccca ccctgagctt cgtcctaagt
2161 tttgaaatgg tctgattgtc ttgagctgct ggggagagct gttccatgag tcggtgttgt
2221 acaaacttgg aaaatgcact cccatttaca ctaccttcat ggtattggtt agaagctcct
2281 catagctaca ctaacatctt agatgactgt gaacgtatct caggagctgc tcggtggata
2341 acaagttata tccacatgat ttaaatagga ctcctttcac cgtccgcact tactgactct
2401 acttccaatg tggtgctccc cactgagtca gcacgttcca caagcttatt agtgttttgt
2461 tagtaactct gtctttattt gttctcaagt ctcagaattg catacttaat ttacatttct
2521 gtattccgtt accttaagga gatagcgtat tttgaccaaa aattaaatgg aaggattaat
2581 tgaataatac tatgtgaatg gactgagcaa aaaacgaaag gagaacagca atcaggatgg
2641 tgcaagaatg aagattcttt atgtatgaag gttcttccgg tcttcagggt acagggtatt
2701 atggaaggcc accgtagcca gctgtagctg tccctggtca tgcaggcctg agaagaaagc
2761 tgttagtgcc tgcagaggaa gtggtttgcc agcaacatct gtcctctcct gttacagcca
2821 gagatgggtg ctgtagagga aactctaatg actcattcca ggaaaatgac ttttacaaat
2881 cact
//