LOCUS AK036350 2744 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:9630059P20 product:unclassifiable, full
insert sequence.
ACCESSION AK036350
VERSION AK036350.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2744)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9630059P20
FEATURES Location/Qualifiers
source 1..2744
/clone="9630059P20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9630059P20"
/db_xref="MGI:2400771"
/db_xref="taxon:10090"
/dev_stage="16 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="cerebellum"
misc_feature 1..2744
/note="putative"
/note="unclassifiable"
BASE COUNT 715 a 627 c 529 g 873 t
ORIGIN
1 ttttgttgtt gttttgtttt gttttttgtt ttttgttttt ttgttttgtt ttgtttttcc
61 cctcatgctg gggcttctcc tgtctttgta aatcacctat agattattac ttgtcctcct
121 cttgttttct tctctgcttt tctttatcag aactttagtg ttttatggat ttgagattta
181 catcgtggta ttttgggctg tgtatacata gtgaggtggt tactatagtc aagcaaatta
241 acatatattt gcttccacag ttactttttg tgacaagggc agcaaaaaaa aaaaaaatca
301 tcttggtaaa aaatactcta gacttggcct gtgcacctgt gtcaatgcat ctctccccca
361 gcgtcgcctt atttcctgtc atctctgtag ttttggtctt ttgcagaatt ctacatatat
421 aagtgagatt ttataatact tctttgtctg ctctaattca cttgggaaga tgtcctccag
481 gggccctgtt gtggcgaagg ttaggatcta ggtaccagtt tcttctctgg tttcatgaac
541 tgtgagttaa agagccctgg gtacaatatc agtgcagcac atcagactat gacatttagt
601 tgatgagacc ttgatgtagt agaataacac tttttctgag ccagcctggg tgagctgggt
661 ggtgcaccta caggttggga ggctggctag gtgcctgcct cggcttctgg agtgcttcac
721 agccaaggtc tttaatatag tttgatgttt taagatgtag aattcagatg gactaactta
781 actgcattga tgtacaaaac ttaaaactct gaaatgctac taacccacat tgtttccata
841 ttctgcctac ctgcctgcct gccttccttc cttccttcct ttttcaaagg attaaggcag
901 aaaatggagc ttgtgcagta ggagacctca aagcctgctt gcacaatgat gcacttctaa
961 caaggccaca tctcctaaca gtgcaacttc ccatggacca agcttaactt cccatgggcc
1021 aagcattcaa gccagcgcac caactttata ccaatgacac agtggataaa tgacttccat
1081 agtcactgaa gtttacacaa ggaagattga tgccaaggac cagtcctgac ttggagaggg
1141 attctgagag aaggggtgtc cagaagcctc aacacaaatg acttgaagtc aaattgtggg
1201 ctacaacctg atggcctatg ttctgctcaa gacagctttc caaattgctc tcttgctctt
1261 gctcatgctt gcacacccct caccccaccc ccacccccac catccgtcca gtgttcgggt
1321 ttttcactat tctaaaaact ctctggatac ttcctgtcct gcagatcaaa aaatgcagtc
1381 ttttatttta cctatcaatt cagtctttac cccaggttcc cttttgacca tcccatgaat
1441 cagcatccca tgacatcagc cccttgattc ttagaaagag acagcatgca caagcacagc
1501 caatgagata gctgggtggg accacacccc tgaaatcatt accattctga ccacgcctgg
1561 acctaaatta ggtcggcccc aggctgacct tgaactcagg acccacctgc ctttgtaagc
1621 ataaacaaaa aaaaattacc tgggtgggct catgccttat gatcgatcag cagtccctca
1681 gtctcttatc tccttcctta gtatcttcct gacaactggc tcacagttca gctatctccg
1741 ttcctaaaga tctgtgaagc tccttatata attcatattg tctccttata ttttgcatag
1801 ttgagcaata ataaggtttt gaactcatgt tttcagagtt ctctcccaca gccctcaagg
1861 gctgtcctga aggtcatagt attccaccat tttgctgaga tattagactc accctcacct
1921 cctggacaca tgctgtctct gattatcatg gagtctttaa ccttgataga gaggacattc
1981 cttgaaggaa gaacatgaaa atatgtacac tattatacaa acaagcctta tgcctacagc
2041 aaccatcaac actcatggag gcccatgccc tgctggctct gctccagggg caaggaccat
2101 gtcatgctgt cccttacaca tggccaagca ggacttggtg gattgacagt atataatgtc
2161 agcggcaagg accatgtcat gctgtccctt acacatggcc aagcaggact tggtggattg
2221 acattatata gtgtcttaaa gacggttact gttgaggttc tccacactag gtggttggaa
2281 aaaataagtg ctttatttat ttatttattt atttatttat agataaggtt ttatcatgta
2341 gtctggcctg gtctcctaac taagtgctgg ggattactgg tgttggctag catatctggt
2401 ccccatctcc cccaggactt tgattctgtt gtaaccagat ttcaccaagg aacacttcat
2461 tttagtgatt cacttttctt ttgaaattcg gtaccatcca tatgagagtt caaaaaacgg
2521 aggctttaat tcttaggctt gaacatactt tgcctgtttc acagtgaaca ctgcatcttg
2581 tattagttat gaaaaacatg aagatcatat gagacacggt gttcgtgtaa tctcatgctg
2641 ggtaattaca agttttaatt gctgcctcag aactttacat tctcctaaag tctttttgaa
2701 agtgtaaaca tcgaaattct taaaaaaaaa acaaacaaaa aacg
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