LOCUS AK036350 2744 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630059P20 product:unclassifiable, full insert sequence. ACCESSION AK036350 VERSION AK036350.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2744) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=9630059P20 FEATURES Location/Qualifiers source 1..2744 /clone="9630059P20" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:9630059P20" /db_xref="MGI:2400771" /db_xref="taxon:10090" /dev_stage="16 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="cerebellum" misc_feature 1..2744 /note="putative" /note="unclassifiable" BASE COUNT 715 a 627 c 529 g 873 t ORIGIN 1 ttttgttgtt gttttgtttt gttttttgtt ttttgttttt ttgttttgtt ttgtttttcc 61 cctcatgctg gggcttctcc tgtctttgta aatcacctat agattattac ttgtcctcct 121 cttgttttct tctctgcttt tctttatcag aactttagtg ttttatggat ttgagattta 181 catcgtggta ttttgggctg tgtatacata gtgaggtggt tactatagtc aagcaaatta 241 acatatattt gcttccacag ttactttttg tgacaagggc agcaaaaaaa aaaaaaatca 301 tcttggtaaa aaatactcta gacttggcct gtgcacctgt gtcaatgcat ctctccccca 361 gcgtcgcctt atttcctgtc atctctgtag ttttggtctt ttgcagaatt ctacatatat 421 aagtgagatt ttataatact tctttgtctg ctctaattca cttgggaaga tgtcctccag 481 gggccctgtt gtggcgaagg ttaggatcta ggtaccagtt tcttctctgg tttcatgaac 541 tgtgagttaa agagccctgg gtacaatatc agtgcagcac atcagactat gacatttagt 601 tgatgagacc ttgatgtagt agaataacac tttttctgag ccagcctggg tgagctgggt 661 ggtgcaccta caggttggga ggctggctag gtgcctgcct cggcttctgg agtgcttcac 721 agccaaggtc tttaatatag tttgatgttt taagatgtag aattcagatg gactaactta 781 actgcattga tgtacaaaac ttaaaactct gaaatgctac taacccacat tgtttccata 841 ttctgcctac ctgcctgcct gccttccttc cttccttcct ttttcaaagg attaaggcag 901 aaaatggagc ttgtgcagta ggagacctca aagcctgctt gcacaatgat gcacttctaa 961 caaggccaca tctcctaaca gtgcaacttc ccatggacca agcttaactt cccatgggcc 1021 aagcattcaa gccagcgcac caactttata ccaatgacac agtggataaa tgacttccat 1081 agtcactgaa gtttacacaa ggaagattga tgccaaggac cagtcctgac ttggagaggg 1141 attctgagag aaggggtgtc cagaagcctc aacacaaatg acttgaagtc aaattgtggg 1201 ctacaacctg atggcctatg ttctgctcaa gacagctttc caaattgctc tcttgctctt 1261 gctcatgctt gcacacccct caccccaccc ccacccccac catccgtcca gtgttcgggt 1321 ttttcactat tctaaaaact ctctggatac ttcctgtcct gcagatcaaa aaatgcagtc 1381 ttttatttta cctatcaatt cagtctttac cccaggttcc cttttgacca tcccatgaat 1441 cagcatccca tgacatcagc cccttgattc ttagaaagag acagcatgca caagcacagc 1501 caatgagata gctgggtggg accacacccc tgaaatcatt accattctga ccacgcctgg 1561 acctaaatta ggtcggcccc aggctgacct tgaactcagg acccacctgc ctttgtaagc 1621 ataaacaaaa aaaaattacc tgggtgggct catgccttat gatcgatcag cagtccctca 1681 gtctcttatc tccttcctta gtatcttcct gacaactggc tcacagttca gctatctccg 1741 ttcctaaaga tctgtgaagc tccttatata attcatattg tctccttata ttttgcatag 1801 ttgagcaata ataaggtttt gaactcatgt tttcagagtt ctctcccaca gccctcaagg 1861 gctgtcctga aggtcatagt attccaccat tttgctgaga tattagactc accctcacct 1921 cctggacaca tgctgtctct gattatcatg gagtctttaa ccttgataga gaggacattc 1981 cttgaaggaa gaacatgaaa atatgtacac tattatacaa acaagcctta tgcctacagc 2041 aaccatcaac actcatggag gcccatgccc tgctggctct gctccagggg caaggaccat 2101 gtcatgctgt cccttacaca tggccaagca ggacttggtg gattgacagt atataatgtc 2161 agcggcaagg accatgtcat gctgtccctt acacatggcc aagcaggact tggtggattg 2221 acattatata gtgtcttaaa gacggttact gttgaggttc tccacactag gtggttggaa 2281 aaaataagtg ctttatttat ttatttattt atttatttat agataaggtt ttatcatgta 2341 gtctggcctg gtctcctaac taagtgctgg ggattactgg tgttggctag catatctggt 2401 ccccatctcc cccaggactt tgattctgtt gtaaccagat ttcaccaagg aacacttcat 2461 tttagtgatt cacttttctt ttgaaattcg gtaccatcca tatgagagtt caaaaaacgg 2521 aggctttaat tcttaggctt gaacatactt tgcctgtttc acagtgaaca ctgcatcttg 2581 tattagttat gaaaaacatg aagatcatat gagacacggt gttcgtgtaa tctcatgctg 2641 ggtaattaca agttttaatt gctgcctcag aactttacat tctcctaaag tctttttgaa 2701 agtgtaaaca tcgaaattct taaaaaaaaa acaaacaaaa aacg //