LOCUS AK035409 3668 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male urinary bladder cDNA, RIKEN full-length
enriched library, clone:9530034H09 product:unclassifiable, full
insert sequence.
ACCESSION AK035409
VERSION AK035409.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3668)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9530034H09
FEATURES Location/Qualifiers
source 1..3668
/clone="9530034H09"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9530034H09"
/db_xref="MGI:2399672"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="urinary bladder"
misc_feature 1..3668
/note="putative"
/note="unclassifiable"
BASE COUNT 1074 a 735 c 841 g 1018 t
ORIGIN
1 tttgaatgta gggatgtagc tcagttgata aagtgttccc ccagcatgct tgcatccttg
61 gctcgatcct cagggccaca taagactttg gaagtcagag gcaagaggtt aaggagctca
121 aggtcagcct caactctcaa ggtcatcttg gttgcccaag actttccctc cactccctcc
181 cccttatttg ttcttcaaca agtaagaaca tttgcacatg agtgtatatt cacttctgta
241 gctgctattg cgggcagtaa tctctgaagt ctggaaacag agacaggggg ctccggagtt
301 catggccagt caacgtcagc tgtgcagcaa gtttgagcca gcccatgcca caccaggctc
361 tgtccttaaa agtcaaaaca aaatgtagga ataagactta aatttactta gatttatttt
421 aatgtggatt attatcataa attggcatct cattttgtaa cctagcctct aagattttaa
481 ttgttgttat attactgaaa ataggagcat cgaggataat aatgatcagc atgttttaga
541 gccccctgtg tgttagctca gtccttgggg gtcgtaatct cttgacgtcg atattgtttt
601 ttttcctata gcaccaatga ggaaattaag gtcacagaat gagtcagcgg aggtctagga
661 ctcccaccca tgtctgtttt aggctagagt ctgtgctttt aatctctagg ccatagtgcc
721 tctataattg ggaattgaag tctgggccag gttattattt atttatttat ttatttattt
781 atgattttgc cttgttccag aaagcatttc agacatctgg ttaagcaact tgcccaagat
841 cacccagaca gtcagaggca gagccaggaa cctctctcac aaactgtaca gtgagataac
901 tcagaggcag actcacatta tatatttctt cccaaacacg agtatgggaa atgggcattt
961 tctttggctg ctttcctgtt cattgtggtt ggatatgttc ttggctttgt agtctgagaa
1021 caggctgaat agcagaagag gaattaagga gcaatgagac caggccagca aggatgtaga
1081 gtgcctgtgg tgggttggat gaaagaccca agagctgtct aagaagtgtg ctccggacat
1141 gcgctgcatg gcgttggcaa acccagcagt tttcggtagt aaaacctaag aaatagcaga
1201 gaagaaaaca gtgggacagt tcaggctcag aagccatgtg tggctggaag aaggaaggaa
1261 atagaaggac aggtgagcct tgctgtccag ggagggcaag agtggccggc tgtagctgag
1321 gtagtgtttg gggcttactc tgcctgaggg tgcaacacac gtacacacac taatgcaaac
1381 actccccaca ccattatgtg catggacaca aacaagtaat aattaggttt aagagcacaa
1441 aaacaagcaa agcatgaaag acagacacca ccagacaccc atttctttaa aaaataaaac
1501 aaaacaaact gtgcacacat cttcagtgat tgagcctgct caggctctgt ccccttcttg
1561 gttcagtaac atcgttttcc tttatcctga gaacgcattc caaacagagt ttgtataaag
1621 aactgtcttt tcttggcaat aacttggaaa ataaacaaat gagacataca gttgtgtggt
1681 acttttattt tttaatggaa cattaatttg ctttcagttt gaattattat aaaaacattg
1741 caggaccttc tccccagact tttttttaag gaatctgtct tgatttagca tccttaacca
1801 aacatgcttt agaggcaggg caaggactaa ctataaagaa aacaaccctt tgacaacagc
1861 ctttaccctg gcagtccacc caaagccgcc aaggcaaggt gtgtttgaag tgcttctcct
1921 tgggaagtgt ggtgtttacc tgaaggtagc ctgggccact ctgtctaagg gaagcagaag
1981 gtgagggctg aggggcaggc acaggaagag gaaatggtcc ctctgtgcct ttagtttccc
2041 aatggtgcta ggagtgtgta ctgctcactc accttggact atgcaactcc agctgaggaa
2101 cacatgaatg tctggtgcca gtggccccgt gagagtgtca gaaccgattc tggagctgga
2161 atcacaggca actgtaagcc aacatgtggg ttatttttat tataaaattg ttaaaatcct
2221 actgtgacta gaaacctggt ctgaattaag tgtaatccct cattggtaac ttggttaaac
2281 ctaattttca acaagaacaa gctggccact aatgaagtaa aggctcaaac agggacggaa
2341 atgcccctta cagtgaccgg aggcaagtct gagccctggt attatttttc agaattatga
2401 ctgattagca gttctaagaa accgtgaaag aaaagtgagc tgttccataa aggcatttgc
2461 atgaaggaag cgagctggaa tttaatggtg acagtaagtt attacgaagc ggctgattcc
2521 gtgaagagca atttggtatt tgtcacggcc ccgttgtcaa ttgcattagt aagggataag
2581 aatgactcaa aggtctgtgg tgggcaagga atggcagggc ggaaactcca taataagagt
2641 gtttagtggt gaggacagaa gaagcgcaga agaaaaaata tataattgca tttgttttta
2701 aatctcctta ctgccaggca tggtggctta tgcctgtgat accagcccac tgggagacgg
2761 aagcaggagg attactgtga gttcaaagcc accccgagct acatagtgag ttccaggtaa
2821 gccaaagcta cacagtgagt ttcaaaacat ttttttaaat tttattaaaa tttttgattg
2881 gtaaccatcc ttaaaggaca tgtgtctatg acattctcag aagccgcaaa ctaggtctgt
2941 ctccattatt ccttggcttc atatcccagt ctgtctaaat tgtaaaccac tgtctttctc
3001 tgtagtttgc attctataac ctaatccact tcatactacc tttggaggac aaagtaggtt
3061 ttgtaaatgt caaaaatgta cgcgagtaat cagaccacac tggatgatag attgtgccac
3121 gaatatgctc ttttccccga cttcacgcat ggtgtgttag tgaagaaata gaagcttaga
3181 aggcaagagc tgtctgtgag actgttagtg tagcaatggt gcctgccctg gggtgaaaat
3241 taacccatgc tttagtataa cctattgcct tccattgtgc ccaggcttat tacagaatgg
3301 ctcatccatg aactcagtta cggtggagtc tacacgttta tgactggaac gagttgaatg
3361 gtgaattagc ctgtggaaaa ggtaccttgc tagaacaaaa gctttggctt cacgatctgt
3421 gccctctcat tgccttactg caccccaaac aaaaggcatt gaaatttgaa aaggcattga
3481 aatttggcaa tagcggaagg cgtccacttt aactaaaact gcacatattt agaataaagt
3541 atgtataata accatttcct aagtgcccgg catagggaaa tgtgttcata acattgccag
3601 cacagtagac gatgtctcac ttttcaggac aagagaaatg atgtattaaa cacttaatta
3661 ctaaggcg
//