LOCUS AK034247 1822 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male diencephalon cDNA, RIKEN full-length
enriched library, clone:9330168G06 product:hypothetical protein,
full insert sequence.
ACCESSION AK034247
VERSION AK034247.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1822)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9330168G06
FEATURES Location/Qualifiers
source 1..1822
/clone="9330168G06"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9330168G06"
/db_xref="MGI:2398444"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="diencephalon"
CDS <1..348
/codon_start=1
/note="hypothetical protein (evidence:
ProCrest,Truncated-Longest-ORF)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAC28647.1"
/transl_table=1
/translation="GRGAARAPRSAAPLAGWSGTAPAPAAPGSAPCCACLAAATVCRA
RGAGSAPAGVRLPLGSGKHGSAGGSGQAQDCPANWSPLPRGRPLPVPLSPLEAQCPLL
QTERLGLRTFRVL"
regulatory 1806..1811
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1822
/note="putative"
BASE COUNT 440 a 499 c 416 g 467 t
ORIGIN
1 ggtcggggtg ctgctcgcgc acccaggtct gcagctcccc tggcaggatg gtcaggaact
61 gctccagcac cagcagctcc aggatctgct ccttgctgtg catgtctggc cgcagccact
121 gtctgcagag ctcgcggagc cggctcagcg cctgccgggg tccggctgcc tctgggtagc
181 ggaaagcacg gaagcgctgg cgggagcggt caggcccagg actgcccagc caactggtct
241 cctctgccaa gggggaggcc tcttcctgtt ccactttcac cactagaagc ccagtgccct
301 cttctgcaga ccgagcgttt agggctgcgg acgttccggg ttctctagcc attctgtgcc
361 aactccaggc tcctctagct acaagctgta tctgcagaag attctcgcaa gatgggaatt
421 cagactagat ctatctcctc cctcccctcg tgctctgggt caccaaaggc acagctgcag
481 aggtgtcacc tacaatccta gtcttctgca ctccacccta aacccacaat attctcaagg
541 gatgctcggg gcaaataaac tacatccaga ctctggtgga agcattgtgg gaacccaagc
601 cacttccggc gccctctagg atgcgcttct ctgtggttct ttccaaatta acccattatt
661 gttggggaaa ggattgtaga ctatgggtaa cacaggagta tatgtttaag cagaggaagt
721 aagttatccg ggacccttgg ttctttctga tctaaagctt gccttcataa ttgttacagt
781 gctgactcga aaattcagct ggcaagtaga ctttgcagaa tggggaatgc aggtgggaaa
841 aggtaagaaa tttggtatgt cttagaaacc gtgaaagaag caggacactc acttgtctga
901 aggggcctgt ctgtccctgg tcctgtcctc ttcctgctgc tccctttcct cccactccag
961 gccaaactac ttgagagaag aatcctccag acacggactc aagatcctac ttcccaccac
1021 ttcttaagac actataggca gtaaagagcc agtatagtct actatggcac ctatccaaat
1081 aactagagat ttccagctct tcagcaaaaa agtttgtgca ttacaagcat ccaaactccc
1141 tctatgcact tccagaaact ttctagtccc caaccccatg gacatcccat tccaacttca
1201 tttcttcctg tttctctaca gcctggctga cacactaaca caaaggttag atgcaagcac
1261 tcccaaacct gagaaaggtg aactgtcatc aactaaaaga aactcaatag accgatctgc
1321 caggtgccgt gacaaacttt acttcggcca tgactagaac caaacaactg ttgtgatggg
1381 tgaggtggtg caagcttcct ccatctgata ttcttgctga ggctgtttcg aggtttaact
1441 ggaatctgat cttcctgtag aatcccatgg aaaactaccc agtgctattc taggaacgga
1501 tgatcagaat gccctagcta aattacctaa gctttgttga aattgcttat ttgttcagga
1561 aacccctcca gctaagcctt tatcttagct gcctatttgt gtggaatctc tttgcggctg
1621 tctaactgct tgtcttaaat tcttttaaaa ctgcttgctt tgaactgctt gtcctgtggt
1681 ctccactaca gctaccgagg gagatgcctt gatgaagtct ctgcactcaa aaatcccatg
1741 ctctggacac tgggggccac atccagatgc acccccaaaa cttggatgtg gtcccagctg
1801 gctggaataa agactttgat tg
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