LOCUS AK034241 1898 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330167E06 product:unclassifiable, full insert sequence. ACCESSION AK034241 VERSION AK034241.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1898) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=9330167E06 FEATURES Location/Qualifiers source 1..1898 /clone="9330167E06" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:9330167E06" /db_xref="MGI:2398437" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="diencephalon" misc_feature 1..1898 /note="putative" /note="unclassifiable" BASE COUNT 547 a 395 c 399 g 557 t ORIGIN 1 actaagtgct tagtgaggtt actctagagg aaagtcagcc ctaaaggttt cctacatttc 61 ctgtggcact agcaaaaggg tgatacttca acatttcata gtagctataa cattctcact 121 aaggaatgaa tttaaaccta tgtattcatg ccgctgtgtg ggaacccatc actttaagtc 181 gtaggctcca gtgatgagta gcagggagat cccaagtggc tgtgagcttt tcacaatcca 241 ctctcagata aaaatgttgc ttggcgatgt gaaagctgag ctggtttagc tcattgtcca 301 gaatgtagat ttttgcctca gacaacatag agcaggaagc tgtaactgat gtttgctgtt 361 tgggaagtac caggccacta catactgcat atgtataaag gaaacatcat tagtatccct 421 ttgagagata cacattctac agctggtcaa aagagcattg gagttataca aatcacaggg 481 agcatggagg cctaaggctt tctgagatac tttctagcag agtgtttgtc tttctgtcac 541 gaaacacttc aaacacaaag caaaaaaaga aaaaaaaaaa gaaaagaaga gaaaagaaaa 601 gaaaaacaca agccttcatc acactggctt aacgattaat atgctaccat gttcatttca 661 tctcattctt tctagttgac atcttattga gggataggtg ttctaaaaac aaaggagagg 721 tgagagagat gacttgtggt taaaagctct gtctcatctt ctagaggaca cagctcagtt 781 ctcagcatcc atactggaca catcacaact gtcttgagaa cccatgctcc tacacacaca 841 ttcacacata ggtgcacaca taagcatcat tgaaataata aaaatatctt ttgaaaggat 901 atttgagctt ttgctttctg ttttatttct ccttttgaag agtctcactg agttccccag 961 gtcggtcttg aatgcattct gcagcccagg caggcgttga ccttactgct ctcttgcatt 1021 agccttcagg taactggggt tacaaagcct tagacacaaa gcacaaccct attctttaac 1081 tcttctgtac ttaaaaatga ctacacttaa tgattcatgt gtgtgtgtgt gtgtgtgtgt 1141 gtgtgtgtgt gtgtgtgtgt gaacagcagg acactagagt actcctgtgc ttatgtgcag 1201 tcagaggaca gcttgctgga agcagctggc gccttccact atgtgggccc cacagttaga 1261 actcaggtcc ttaggcttaa agacgatttc ctttacctac tgagccatct tgcctgcccc 1321 ctgtttcttt ctttctttat tttcttagag gtttgcttta ttttatgtat acatgagtgc 1381 ctgtatgtgt atcatgtacc acatgtgtgc ctggtgccta cagaggctag aagagggtgt 1441 ccaaccccct ggaactggat ctacaggtga ttgtaagctg ccaggtgagt gctggaaacc 1501 aaaaccatgt tctctgcaag agcagcaagt ataccactat acctggctgg cttgagtgga 1561 gccattggac aggatggctg atggcttcga ctcatgaatc tatgaataga aaacccttat 1621 tttgtataca atgcagtgat acctctataa gttacacttt gttctattca gtttatttta 1681 tgtcctcgtt agcaaatgct gtctatggga tttttctcaa ctcgactcat taagactgtt 1741 tttctaacta ccaggaaccc aaaacaccaa agtgacctcc agacagtaac atgagaataa 1801 tacaggatac ttgaaaacgt caaaataaag gttgagtatt ggtagtcatg tcagtaagtc 1861 ccagattagc caacactaca tcgtgagatc ccgtctcc //