LOCUS       AK034241                1898 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus adult male diencephalon cDNA, RIKEN full-length
            enriched library, clone:9330167E06 product:unclassifiable, full
            insert sequence.
ACCESSION   AK034241
VERSION     AK034241.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=9330167E06
FEATURES             Location/Qualifiers
     source          1..1898
                     /clone="9330167E06"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:9330167E06"
                     /db_xref="MGI:2398437"
                     /db_xref="taxon:10090"
                     /dev_stage="adult"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /sex="male"
                     /strain="C57BL/6J"
                     /tissue_type="diencephalon"
     misc_feature    1..1898
                     /note="putative"
                     /note="unclassifiable"
BASE COUNT          547 a          395 c          399 g          557 t
ORIGIN      
        1 actaagtgct tagtgaggtt actctagagg aaagtcagcc ctaaaggttt cctacatttc
       61 ctgtggcact agcaaaaggg tgatacttca acatttcata gtagctataa cattctcact
      121 aaggaatgaa tttaaaccta tgtattcatg ccgctgtgtg ggaacccatc actttaagtc
      181 gtaggctcca gtgatgagta gcagggagat cccaagtggc tgtgagcttt tcacaatcca
      241 ctctcagata aaaatgttgc ttggcgatgt gaaagctgag ctggtttagc tcattgtcca
      301 gaatgtagat ttttgcctca gacaacatag agcaggaagc tgtaactgat gtttgctgtt
      361 tgggaagtac caggccacta catactgcat atgtataaag gaaacatcat tagtatccct
      421 ttgagagata cacattctac agctggtcaa aagagcattg gagttataca aatcacaggg
      481 agcatggagg cctaaggctt tctgagatac tttctagcag agtgtttgtc tttctgtcac
      541 gaaacacttc aaacacaaag caaaaaaaga aaaaaaaaaa gaaaagaaga gaaaagaaaa
      601 gaaaaacaca agccttcatc acactggctt aacgattaat atgctaccat gttcatttca
      661 tctcattctt tctagttgac atcttattga gggataggtg ttctaaaaac aaaggagagg
      721 tgagagagat gacttgtggt taaaagctct gtctcatctt ctagaggaca cagctcagtt
      781 ctcagcatcc atactggaca catcacaact gtcttgagaa cccatgctcc tacacacaca
      841 ttcacacata ggtgcacaca taagcatcat tgaaataata aaaatatctt ttgaaaggat
      901 atttgagctt ttgctttctg ttttatttct ccttttgaag agtctcactg agttccccag
      961 gtcggtcttg aatgcattct gcagcccagg caggcgttga ccttactgct ctcttgcatt
     1021 agccttcagg taactggggt tacaaagcct tagacacaaa gcacaaccct attctttaac
     1081 tcttctgtac ttaaaaatga ctacacttaa tgattcatgt gtgtgtgtgt gtgtgtgtgt
     1141 gtgtgtgtgt gtgtgtgtgt gaacagcagg acactagagt actcctgtgc ttatgtgcag
     1201 tcagaggaca gcttgctgga agcagctggc gccttccact atgtgggccc cacagttaga
     1261 actcaggtcc ttaggcttaa agacgatttc ctttacctac tgagccatct tgcctgcccc
     1321 ctgtttcttt ctttctttat tttcttagag gtttgcttta ttttatgtat acatgagtgc
     1381 ctgtatgtgt atcatgtacc acatgtgtgc ctggtgccta cagaggctag aagagggtgt
     1441 ccaaccccct ggaactggat ctacaggtga ttgtaagctg ccaggtgagt gctggaaacc
     1501 aaaaccatgt tctctgcaag agcagcaagt ataccactat acctggctgg cttgagtgga
     1561 gccattggac aggatggctg atggcttcga ctcatgaatc tatgaataga aaacccttat
     1621 tttgtataca atgcagtgat acctctataa gttacacttt gttctattca gtttatttta
     1681 tgtcctcgtt agcaaatgct gtctatggga tttttctcaa ctcgactcat taagactgtt
     1741 tttctaacta ccaggaaccc aaaacaccaa agtgacctcc agacagtaac atgagaataa
     1801 tacaggatac ttgaaaacgt caaaataaag gttgagtatt ggtagtcatg tcagtaagtc
     1861 ccagattagc caacactaca tcgtgagatc ccgtctcc
//