LOCUS AK032962 3092 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 12 days embryo male wolffian duct includes
surrounding region cDNA, RIKEN full-length enriched library,
clone:6720482C12 product:unclassifiable, full insert sequence.
ACCESSION AK032962
VERSION AK032962.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3092)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=6720482C12
FEATURES Location/Qualifiers
source 1..3092
/clone="6720482C12"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:6720482C12"
/db_xref="MGI:2396629"
/db_xref="taxon:10090"
/dev_stage="12 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="wolffian duct includes surrounding region"
misc_feature 1..3092
/note="putative"
/note="unclassifiable"
BASE COUNT 799 a 669 c 716 g 908 t
ORIGIN
1 tactgagatg ctctgtgctg ctgttggtcc ttttattgcc gactggtgct ccactgtgtt
61 gatttatccc tgtctcctta ttcatctgtg atgggcatgg tacttggggc cattatgagt
121 aatgctgtca tgcatacaga tcctcctgca gatacatatt tttgtttctc ttgagcagac
181 atctgggcgt agaagtgctg aatcatggtg aatgtatttt aactttatct tggactgcca
241 aagtacacta tattcttttg aactttacct tttttttttt tttttttttt ttccttcgtc
301 aggagttatt ctttggtttg tagtattgtc tatacccctt tgtttctgtt gaatctcatt
361 gttggtctta aaatgcactc tgttaggatt cattctggat aagatggtac agggttagga
421 ctcatgattg agagattagt taggcagggc agaaaaggat ttcaaccaag agctgtactc
481 cttgtaagag ggtctatttc taagatatga atgaaagact cctcaaaccc acccaggaag
541 cagttacccc tggaggatat gaagcatttg cagggaaaat tattcccagt ggggaaggtt
601 ttcctagtta gggttactat tgcgccatga ccaaagcaaa ctgaggagga aggggtttat
661 ttggcttatg cttcgaatca ctgtttaccc ttaaaggaat tcaggacagg gactcaaaca
721 gtggaggaac ctaggggcag aaactaatgc agaggccatg gaagagtttc ctggcctacc
781 agcccagggt tggcaccacc tacagtgggc taggccctcc cccatcaagc cctaattaca
841 aacatgctct acagctagat ggattgaggt tccttccttc cagatgactc tagctcagtg
901 gtttacaacc ctcctaatgt tgtgattctt ttttcttcca tgttgtagtg acccccacac
961 acatgaaaac acttcttcat aactgtagtt ttgctactgt tattgtaatg tacatatgtg
1021 ttttccaatg atcttaggca acctccacct gtgaaggtgt tgtttgatcc ccaaagggat
1081 ctcgacccac ctgttgagaa ctgctggtct agtttgtgtc aagccgacat aaaactagtc
1141 agacagaaga tgcacatttt ctaacttggc agtttccata acttcccttt cctcacagaa
1201 ggagaaccct ctggccaact gggtctggga accaagaatt ggcaagtagt aggtaaagac
1261 cgggaaagct ggcacaggct ctctttctgc ttctgaggag attagcaaat agaaggagat
1321 gcaggaccta gacacatgga gatgggatag gaagttggtt tttgtaatgg aaggaaggta
1381 aatatattgc tcttctcaga tagaccaaag actacccaat ataaattgct agtttatctt
1441 tcagaaaact aaaaataaaa tgggattttt atgaacctca ggccagtcct aaatgcactc
1501 tatagccaaa gatgactttg aacttcctat ctgcccttag cccctagggg ctcagctata
1561 ggtttaagtg gtgctgggga ccaaatccat ttcacacatg caatcagctg agcttcatcc
1621 gcagcccaca tctgcttgtt taaagaaaat gtgcctatga taagaacttc tcatgatcgt
1681 caacagttag ttcagcgaag catccctgtt ttctgctctc gtgcaggtgt acacttgctg
1741 gttgttctta aggatgccaa aagcaattca ggtttcatag accagtgagt gtgtggaggc
1801 tgtgaacgct ggctgtctgc tgggagcaca gtgagagtcc taaacaaggt tccggtttga
1861 tcttcatctc atttagattg ttgacttgtg tcttagctat ctagtaacaa atagctgcag
1921 tacagcagct taaactccca cgtaggtata atcccagaga tctgcggggg tgggattctt
1981 ggcgttcagc ttctatctgt tagaggacag cagtcaaggc atccgctagc tctcatctga
2041 aaggtcatcg agggaagact ttggaggtca tgtggctatt ggcagaatgt agcttgctga
2101 ggttttgact tggagccatg gttcctactc cgctgttgac tggaggccaa cctcagttcc
2161 tcatcaagtg gagctttcta gaatagctgc ttcctttatc caagtgtgta agcccagaaa
2221 gaccgacagg agagtgtgct aactagacag aatgctacaa ttttaggtga ccaaacctcg
2281 gaaggaatga cccattcatt gctttcggtg cgttgtaccg attttgagca agtcattgac
2341 tccatcacct caaggaaagt ggattgtgta gtaatgaaca ccaggaggct atcagattgc
2401 ccaccactgg gtcatcacac ctgcctacct cagagcccca gcaccacata ttctgcatgt
2461 gtgcatgtgt gtttgtaggt ttctttgctg gttgaacagc ctgtctgacc ttcttttcct
2521 gttgctgtga taaaataccc taacaaaaag aaacttatgg gagaaagggt ttatttgggt
2581 cgcagacaag gtatagtccg acaaggtgac aggagcttga agcagctggt cacagggcag
2641 ccacatcaga agacagagtg gcataggaat gtgtgaaact cactttctct tcctactcac
2701 cccagaaacc caagcccagg gaatggttct accaactttt agtctgtgtc ttcccacctc
2761 agttagccaa attaagataa tccctgacag gaatggccag aggctcatct cccagtgttc
2821 ccagatccct cgcagttcgt aattaattct gcagctcagc ttgcccacag gagcaggaat
2881 tggtgggaag gccgccagca cagggtcttt tattcttcca atttgttgtt cctgctggaa
2941 gtgtatagct ggaatatggt agtttatatg tcaagaccag cattctacac agagccttgc
3001 tccaaaaagg atattcccag cacttgggag aaagaggcag gtggatctct gtgatttcaa
3061 ggttagccta gtttatatag taaattgtct ct
//