LOCUS AK032225 3265 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430507E23 product:hyperpolarization-activated, cyclic nucleotide-gated K+ 3, full insert sequence. ACCESSION AK032225 VERSION AK032225.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3265) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=6430507E23 FEATURES Location/Qualifiers source 1..3265 /clone="6430507E23" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:6430507E23" /db_xref="MGI:2395682" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="olfactory brain" CDS 104..2443 /codon_start=1 /note="hyperpolarization-activated, cyclic nucleotide-gated K+ 3 (MGD|MGI:1298211 GB|NM_008227, evidence: BLASTN, 100%, match=3260)" /note="putative" /protein_id="BAC27769.1" /transl_table=1 /translation="MEEEARPAAGAGEAATPARETPPAAPAQARAASGGVPESAPEPK RRQLGTLLQPTVNKFSLRVFGSHKAVEIEQERVKSAGAWIIHPYSDFRFYWDLIMLLL MVGNLIVLPVGITFFKEENSPPWIVFNVLSDTFFLLDLVLNFRTGIVVEEGAEILLAP RAIRTRYLRTWFLVDLISSIPVDYIFLVVELEPRLDAEVYKTARALRIVRFTKILSLL RLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDGCLQFLVPMLQD FPSDCWVSMNRMVNHSWGRQYSHALFKAMSHMLCIGYGQQAPVGMPDVWLTMLSMIVG ATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQ GKMFDEESILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQP GDLVVREGSVGRKMYFIQHGLLSVLARGARDTRLTDGSYFGEICLLTRGRRTASVRAD TYCRLYSLSVDHFNAVLEEFPMMRRAFETVAMDRLRRIGKKNSILQRKRSEPSPGSSG GVMEQHLVQHDRDMARGVRGLAPGTGARLSGKPVLWEPLVHAPLQAAAVTSNVAIALT HQRGPLPLSPDSPATLLARSARRSAGSPASPLVPVRAGPLLARGPWASTSRLPAPPAR TLHASLSRTGRSQVSLLGPPPGGGARRLGPRGRPLSASQPSLPQRATGDGSPRRKGSG SERLPPSGLLAKPPGTVQPPRSSVPEPVTPRGPQISANM" BASE COUNT 598 a 1034 c 907 g 726 t ORIGIN 1 ggcacgcggg tcggagctcc cctgcctggg ctgctctccc agagacttgc gcgcccgcca 61 tggccctgga ccggttgggg aggccctacg agtgagggca atcatggagg aggaggcgcg 121 gccggcggcg ggggccggcg aagcggcgac ccctgcacgc gagacgcctc ctgcggctcc 181 ggcccaggcc cgcgcggcct caggtggggt gccggagtct gcgcccgagc cgaagaggcg 241 gcagctcggg acgctgctgc agccgacggt caacaagttc tctctccggg tcttcggcag 301 ccacaaagca gtagaaatcg agcaggagag ggtgaagtcc gccggggcct ggatcatcca 361 cccctacagc gacttccggt tttactggga tctcatcatg ctgctgctga tggtggggaa 421 cctcatagtt ctgcctgtgg gtatcacttt cttcaaggag gagaactctc caccctggat 481 cgtcttcaat gtcctctctg acactttctt cctgctggat ctggtgctca acttccgaac 541 tggcatcgtg gtggaggaag gtgccgagat cctgctggcg ccaagggcca tccgaacgcg 601 ttacctgcgc acctggttcc tggttgatct gatctcctcc atccctgtgg attatatctt 661 cctagtggtg gagctggagc cacgactaga tgctgaggtc tacaaaacgg cacgggccct 721 gcgcatcgtt agattcacca agatccttag cctgctgcgg ctgctccgcc tctcccgcct 781 catccgctac atacaccagt gggaggagat ctttcacatg acctacgacc tggccagtgc 841 agtggttcgc atcttcaacc tcattggaat gatgttgctg ctgtgtcact gggacggctg 901 tctgcagttt ctggtcccta tgctgcagga cttcccgtcc gactgctggg tctccatgaa 961 ccgcatggtg aaccactcgt ggggccgcca gtattcccac gccctgttca aggccatgag 1021 tcacatgcta tgcattggct atgggcagca ggcaccggta ggcatgcctg acgtctggct 1081 caccatgctc agtatgattg tgggcgccac gtgttatgcc atgttcatcg gtcacgccac 1141 cgccctcatc cagtccctgg actcttcccg gcgacagtac caggagaagt acaagcaggt 1201 ggagcagtac atgtccttcc acaagctgcc cgctgacacc cggcagcgca tccacgagta 1261 ctacgagcat cgctaccagg gcaagatgtt tgatgaagag agcatcctgg gggagctgag 1321 cgagccactt cgggaggaga ttattaactt cacctgccgg ggcctggtgg cccacatgcc 1381 gctgtttgct catgctgacc ccagcttcgt caccgcagtg ctcaccaagc tccgttttga 1441 ggtcttccaa ccaggggacc tggtggtgcg tgagggctcc gtgggcagga agatgtactt 1501 catccagcac gggctgctga gtgtgctggc acgtggcgcc cgcgacaccc gcctcactga 1561 tggatcctac tttggggaga tctgcctgct gactcgaggt cggagaacag ccagtgtaag 1621 ggctgacacc tattgtcgcc tctactcgct cagcgtggac cacttcaatg cggtgcttga 1681 ggagttccca atgatgcgca gggcttttga gacggtggcc atggaccggc ttcggcgcat 1741 cggcaaaaag aattcgatac tgcagcggaa acgctctgag ccgagtccag gcagcagcgg 1801 tggcgtcatg gagcagcatt tggtacaaca cgacagagac atggctcgtg gtgttcgggg 1861 cctggctcct ggtacaggag ctcgactcag tggaaagcca gtgctgtggg aaccactggt 1921 gcacgcccct ctgcaggcag ctgctgtgac ctccaacgtg gccatagcct tgactcacca 1981 gcgaggccct ctgcccctct cccctgattc tccagccacc ctcctagctc gatctgctag 2041 acgctcagca ggctccccag cctccccact ggtgcctgtc cgagcaggtc ctctgctggc 2101 ccggggaccc tgggcgtcca cttctcgcct gcctgctcca cctgcccgaa ccctccatgc 2161 cagcctatcc cggacagggc gttcccaggt atctctgttg ggccctcccc caggaggagg 2221 tgctcggagg ctaggacctc ggggccgccc actttctgcc tcgcaaccct ctctgcctca 2281 gcgagcaaca ggggatggct ctcctaggcg taaaggctct ggaagtgagc gcctgccccc 2341 ctctgggctc ttggccaaac ctccagggac agtccagcca cccaggtcat cagtgcctga 2401 gccagttacc cccagaggtc cccaaatttc tgccaacatg tgaaatccta ggttacactg 2461 gccttagcta ttggcacgca ataacgtgtg cccgagggta gacgcccctt gggggaaggc 2521 tgtgggggac ctaacatact gccctttatc accacaaagc tattctctgt gtcctcagct 2581 caaagcagct gcagcctgct aatcctaatc acatacccat ttgtcattgg taccccatgc 2641 ctaccatgtt caaggcactg tgctaggtac tgtgtatcca ctgccaagta gaaataactc 2701 gaagcccttt aacaagggtg tccccaggcc acggtcctgc caggcgcagg cctgggccca 2761 cagccctgcc tttattaagc acaagtactt gctgcctcca tcactgccga gtaactagac 2821 ggctgtctcc ctgtcagtga ccctgcaggt ggtgccagtg cgtcctctct tcccatctcc 2881 tttgtcgtag ctgggtaccg tcaattatct agtacagcca acagatgtct agagccctgg 2941 gtgtgaacat cgaccctctg actggcacct gtgggccctc cttgtccaca ccaagtgaga 3001 atccacgtct gcccactgta gtctgccctc cgcagctcct gtgtggacgc actaccttta 3061 tgagctagaa gctgctcttc actgtgcccc ctgcctcagt ggtgttgccc ctaaagctaa 3121 ggggcacgcg gcacctcctt acctactgtg ccagcctagt tccccccagg tagggggcca 3181 ggggctgaat cctcatgtga ccttttatct ttccctcttt gtcttattta tttggtcgtt 3241 tattaatttt atttattcat ttgct //