LOCUS AK027927 1010 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110005K13 product:T-cell receptor beta chain, full insert sequence. ACCESSION AK027927 VERSION AK027927.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1010) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=1110005K13 FEATURES Location/Qualifiers source 1..1010 /clone="1110005K13" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:1110005K13" /db_xref="MGI:2389644" /db_xref="taxon:10090" /dev_stage="18-day embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="whole body" CDS 146..499 /codon_start=1 /note="T-cell receptor beta chain (MGD|MGI:98578 GB|X00439, evidence: BLASTN, 100%, match=240)" /note="putative" /protein_id="BAC25669.1" /transl_table=1 /translation="MQKSCDENEGTPQNTPKADEGHPSEDPPQQAGETLQASGENVRE ETEGSHRGEPAEPSPEPKEDTPARHLNPEEVIRGVDELERLREEIRRVRNKFVLMHWK QRHSRSRPYPVCFRP" regulatory 983..988 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1010 /note="putative" BASE COUNT 317 a 182 c 216 g 295 t ORIGIN 1 gagtagcagc tctgtcctgc tagagaagag tggcccagct acttccagca ctcttgatct 61 tttgagcgcg acataaatcg aggtgcaaga agagaggaaa atctccaggt acctacagga 121 ttaattcatt aagaaaataa tcaacatgca aaagtcttgt gacgagaacg aaggaacacc 181 ccagaacaca ccaaaagcag acgaaggcca tccttcagaa gatccaccac agcaggcagg 241 agaaactctt caggcttctg gagaaaatgt gagggaggaa actgaaggga gccatagagg 301 agagcctgct gaacccagcc cagagcccaa agaggacact cccgcaaggc atctgaaccc 361 cgaagaagtg ataagaggcg tagatgagtt ggaaaggctt agggaagaga taagaagagt 421 aagaaacaag ttcgtgttga tgcattggaa gcaaagacat tcccgaagcc gtccttaccc 481 tgtgtgcttc aggccttgaa atcgtttttt tctctgatat tgaaatgtgg ctgctgcttt 541 ctttctctta gcattttctg atgtatcttt gaacttcatt ttacttttaa taataattac 601 ctggcggtat tttctgttat gtagtttcgt tgttaccagc atctcattgg attttggatt 661 tttgacccat tttccacgtt tatctttcag ttggaaagtt tcacatttat gcatggaaat 721 atacaattag acagcaaatt gaaaaaaaca gcagcatagt taggatcaac tcacatagat 781 aggaaaattc ctaattatgt gtgtacatgt ataattatac gtatcaaaaa atttacagtg 841 cttatttttg gtgtggtgtg ttttaatttt gccttttact tatgttgatt ttttttaatg 901 aatacgtgtc tcacaaagaa ctgcagattt ttttaataag tgggagttaa ttaaaattaa 961 tttgtaacca gcttgtagag gcaataaagg cactaaactc ttgatgaact //