LOCUS AK020813 1247 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult retina cDNA, RIKEN full-length enriched
library, clone:A930005N03 product:unclassifiable, full insert
sequence.
ACCESSION AK020813
VERSION AK020813.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1247)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A930005N03
FEATURES Location/Qualifiers
source 1..1247
/clone="A930005N03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A930005N03"
/db_xref="MGI:1910981"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="retina"
misc_feature 1..1247
/note="putative"
/note="unclassifiable"
BASE COUNT 299 a 300 c 267 g 379 t
ORIGIN
1 ggattatttt tactcctctc tttaaagcat caccattgga cctgcacaag ggctagcaag
61 gcacacccgc atcacttggg gactctctcc gcctctctag tcacctggcg caaggcgctg
121 tccagctgct gctttctttg atctgtcttt tccaaaatat cctgccagcg ctgattgaga
181 attctgagct tgtactggag gttgcttgct tcttcgcctt cactcgactc gatgagatca
241 tttcctgctt tgttgacggc ttctaccgtg gactggtggg ctaagacgtc gttttggagc
301 acctgaaaat gttagcgtga tcattcactg gaaacacagt aacagagagg ggtctcgggc
361 atcccaagca aacctccaac tcaacaggta gctaaagacg acactggaat tcttttttgt
421 ttttactttg tttgttgtgg ttttgttttt caagacaggg ttttgctgtg tagccctggc
481 agtcctgggg atttgctctg tagaccaagc tggtcttgaa ttcacagaga ttaaactacc
541 tgttnttgag tcccaaatgc tagggataaa ggtgtgctgc tgccgctgct aggctgactt
601 tttcacctcc cgcgtgcttg gaatacaggt gtggggtacc acatccagtt gtaggtattg
661 ccgagggatc aagcncaggt ctttatgcat gctgcataag gaatctagca cctgagccac
721 agctctagtc cactctacct gtttcatttc tttcggtgtg aaatattctg aagccgaagc
781 ctcataacaa aaagtgttaa ggcaacagag tccctccctc cagctttgtg gctccctaaa
841 tggacataca tttagttggc cagcactctc aaagggactg cacacacact tgacagctat
901 ccccactaga atgaccttgt agctgatcta ctacatactt ctgtagagat ctgtagagat
961 tatgacttga tgattaaaac attttcattg attcaagtcc agtttaattc gacttaatcg
1021 tagcatccct tatcttaggg gatacgctca cgcttctctt ctcattataa cagcaccaca
1081 catctaagac atatgttttc taatgactgt tttgcaagaa gaactgtatt acattattct
1141 cgcactgaag ggatgctgga actactaact tgaaaggact cctttgccta gcgttagtcg
1201 agagttcatt ataaacctac cctaccactc actgatgtat gtttggc
//