LOCUS AK020593 948 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530041E20 product:unclassifiable, full insert sequence. ACCESSION AK020593 VERSION AK020593.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 948) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=9530041E20 FEATURES Location/Qualifiers source 1..948 /clone="9530041E20" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:9530041E20" /db_xref="MGI:1912601" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="urinary bladder" misc_feature 1..948 /note="putative" /note="unclassifiable" BASE COUNT 250 a 220 c 226 g 252 t ORIGIN 1 tgcgtggagc ttctcccacc gcatagctgt ccctgcctgt gatcctggca ctgggggccc 61 ggaagcaggg agatcctgag cttatggtgg gtctctgagg ccaccctgga gtatgtgaga 121 ccctggctca aagaaaaaaa aaagcctttt gtcattttaa acatgtccct gagctttaaa 181 cctgacctct gagtcatggt ttggtgatca gcatctgccg tgtagatggt agagggagcc 241 cacagttaat cattgctttc ttaattatta acagacttga aaccaaggag tcaggcacat 301 tgtgagttat tgctaattgg tctgagatca gcattccaag tggctcatca aaacacatct 361 tggaccaccc tgggaaaggc ctgtcggtcg gtctcacttt ccaaaacttg ggccaaagtt 421 tcccctggca gttcctgggt gtgttttgtt tttcatttat ttgtttcgag agacaaggtc 481 ttagtatgtt tcccaggctg gcctagaact cagatccgcc agcctctgtg tctatagtga 541 tgggattaga gatgtgcgcc ccatacttgg tgtccactag catctcaaac ccctgtgtta 601 ctgcttaagt cactgaacat aatcgatgag acctttaaaa aaaaatgact ggggagctga 661 gcctggtgac ttggaagcta gcagcaagag aatcaggagt tcaaggccat ccaaggatac 721 atagctaatt tgatccaggg caacatgaag catcaaggct ctatttacgc gcacacacac 781 acacacacac acacacaccc caaatatggg ggctgtggct cagtgataga gtgcttgcct 841 agcatagatg gggctctggt tctgttccca gtgctgcaaa aagaaaagat aaatgcatat 901 caaactatat tttgtactcc cttaaaataa catggttttg tgcaagcc //