LOCUS AK020405 1017 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 12 days embryo embryonic body between diaphragm
region and neck cDNA, RIKEN full-length enriched library,
clone:9430006E15 product:unclassifiable, full insert sequence.
ACCESSION AK020405
VERSION AK020405.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1017)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9430006E15
FEATURES Location/Qualifiers
source 1..1017
/clone="9430006E15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9430006E15"
/db_xref="MGI:1911042"
/db_xref="taxon:10090"
/dev_stage="12 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="embryonic body between diaphragm region and
neck"
misc_feature 1..1017
/note="putative"
/note="unclassifiable"
BASE COUNT 277 a 231 c 231 g 278 t
ORIGIN
1 acagagcaag ttccaggaca gccaaggcta cacagagaaa ccctgtctgg aaagagaaac
61 aaaccaaacc aaaccaacaa acaagctgaa caagccatga gtaacaagcc agcaaggagc
121 gatgctctgt ggtctccctt cagttcctgc ctccaggttt ctaccctgag tgcctgccct
181 gactccccat ggattagtca aataaatcta tccaatcaaa gttgtagtcg tgctaccaca
241 gcatgactga atcaaaacta atacacttgg gtggtgaatg taacacaaat ggagccagtg
301 gactgagcag cgtggccatt gctctcggct gtgattgtgg cagccacatg acgggttgca
361 ttagctcttg ttggtttgac ctccctgcaa tgagggactg tatccctgaa ctatgagtca
421 gaatatgtgg ttttgccagg cacttgggaa gcagaggcag gtggatcttt gtgagtttga
481 agccagcctg atctacagag agtgagttcc aggatagtca aggctatgta gggaaactct
541 gcctcaaaac aaacaatcaa agaaaaacaa aaacaaaaaa gactatgtgt tttatttaaa
601 ttattttatt tttgttttgt tttgttttat tttattttat ggtgtttccc tccatgtatg
661 tctgtaccat atgcatacgg tacccacaga gaccagaaga caatgttgga tcccctggga
721 ctggagttat agatagttgt gagcttccat gtgtcagatc ctctggaaga gccttgtgtt
781 ttaaccactg agctatctct tcagtcctgt tgcttggctg tcattgtagt gaaggacatg
841 tgtgccacag catgcatgtg aaggtcatag gacactctat ggagtctgat ctctttccac
901 cttcatgtag gttccaggaa tctaactcag atccccaagt ttgaacagca agcccctttg
961 ccagctgagc cctctcactg gccctctgtg tgagccagaa taaatccttt gtgtcct
//