LOCUS AK020385 1103 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male diencephalon cDNA, RIKEN full-length
enriched library, clone:9330177L23 product:unclassifiable, full
insert sequence.
ACCESSION AK020385
VERSION AK020385.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1103)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9330177L23
FEATURES Location/Qualifiers
source 1..1103
/clone="9330177L23"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9330177L23"
/db_xref="MGI:1911041"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="diencephalon"
misc_feature 1..1103
/note="putative"
/note="unclassifiable"
BASE COUNT 300 a 252 c 236 g 315 t
ORIGIN
1 tttttttttt tttttttttt tttttttttt tgccatagca ccagccacca catgcctgaa
61 atgctgagga cttggggttg gtcaaaccct tttgcttccc tgcacactga gacacaccca
121 ggttaaagct gagaaaatgg cagtctctag gagctcctgc gtccacatga actttgcccc
181 tatgttccct caggtgctga tgctgctgga attggcattt cattaggctt cccccctttt
241 catttattcc attaggcccc gggcagaact tctgggagct acttgatgac gcatctgtta
301 attttccttt agggagagga gtctatgctg tttggcacag gttcatggcc cttttgttat
361 gttctcagat cctttattgg tattcttccc ttctggcacc ccacaaaaag gcaagaaggg
421 aaatagggat gtggggaggg gcacaccaaa agggttctaa gactaaagga ctagcaagaa
481 agagctgggt ctgagacttc tctctgaacc cagcttctga gcttaaaggt cttaaaggtt
541 ctaaacgtaa ttttcacccc caccccaccc cccaaaatat actactagct aggggctaag
601 tgttcgaaaa tactaggctg tggaagatag ttcacatgca aaccatgaca gtcaggaaaa
661 gtacagtaga cacagaaagg ttggaagacc aaaagaatgg agtgacgaat gcttactcta
721 caaagatgcg acagtgttgc ctctttacat caacctcctt ggaactgagc ttgggcaata
781 tttacttagt atagtaacaa agtgtcactt catcacatca accttcttag aactacagag
841 catgggcaat agttacttag tattgtaaca aagtgtcaca tcatcacatc aaccttttta
901 gaactacaga gcatgggcga tagttactta gtattgtaac aaaataccag acacacgcag
961 tttaaggata gaagggttta ttttggctca cagtttgagg acactgtcca ccttcagaac
1021 catggggcag ctggtcacat tatatcctgg accaagttct tggcacctcc tttgaaagtc
1081 agccattcta gggtccctga ccg
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