LOCUS AK020330 993 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230110I02 product:unclassifiable, full insert sequence. ACCESSION AK020330 VERSION AK020330.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 993) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=9230110I02 FEATURES Location/Qualifiers source 1..993 /clone="9230110I02" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:9230110I02" /db_xref="MGI:1911556" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="epididymis" misc_feature 1..993 /note="putative" /note="unclassifiable" BASE COUNT 224 a 230 c 232 g 307 t ORIGIN 1 tagtgacact tcatttctgt gagttctttg gtgatgctgt gtatgtgtgg tgctttgaag 61 ggaaagctac acacagacag ctttcagata cccaaggcta ttgcattaga tggcctcatt 121 acctcatctt ctatggggtg cgttaaatcg gacctcgtgg gaaacaggcc tcagagggtg 181 ctgagagcct cgtccttgcg ggaaggattg ccacttctgc acagatggtg cttgcagttt 241 tatttcacgt cacaagggag tatcagcttc tggttttcct cctttgagtt aagaatatat 301 gttttagttt tatatttttg tgcatgcaca tgtgtatgca tctgtgtgtg tgtgtgtgtg 361 tgtgtgtgtg tgtgtgcgcg cgcgcgcgtg cgtgtgtgtg catgcgcacg cgcacatgcc 421 caaagttaag agctgcctga tacaggtgct ggggacaaaa ccctggtcct ctgacagaag 481 ctaatcactg ggcctctcca tcccctccac acccctctcc atggcccccc agaccccaga 541 cccattttct cgacccattg ctcctagcct tccctctctc cacacccacc aactccaaca 601 agtggatttt ttgaaacccc ttggctgtgg tgatgagttc ttatacagcc gagctcatag 661 acaacatgaa acttaggaaa tcggagtttg cttttgttgt tgttgttgtt gttgttgttg 721 ttgttcagag aagcatttgc tcttgtttaa cttctggagc ccaggcttct tattactgct 781 cctactgcaa tagcagtaac agccttgggt ttaggaagag ccttctctac cctggcctgt 841 ttttcagaag catagataac ttccaacata tcctaattga gctgacattt cacacatatt 901 tggtctatgc ctaagggaaa tttaggaggg agagacaaaa tggaatccat tcatttattt 961 ctgagtcaag taaaagccat gagaaaaaca ttt //