LOCUS AK020279 1250 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male cecum cDNA, RIKEN full-length enriched
library, clone:9130214F15 product:unclassifiable, full insert
sequence.
ACCESSION AK020279
VERSION AK020279.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1250)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9130214F15
FEATURES Location/Qualifiers
source 1..1250
/clone="9130214F15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9130214F15"
/db_xref="MGI:1910893"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="cecum"
misc_feature 1..1250
/note="putative"
/note="unclassifiable"
BASE COUNT 389 a 220 c 293 g 348 t
ORIGIN
1 gaacttagct tttgatcgtg ccacccacta cctcatcttg aggatggcta cactacatca
61 ccacatcacc agtgtccagg agttgtgaat acagagaggc aaggtcattt cactagtgca
121 ggttgacctg tgatatttgc cttatgtatg tgtatcacct ctggctaatt agctctgtgc
181 atagcgagtg ctcagtaaat gagaactggt gagccggaag gaatctgcca aggataaata
241 gtgaagaaaa gcctgtggat gaggcccctc cttgttggta gaattgtgca ggcactaccg
301 tggttatggg ctcaactaag tgagctgtga catcagcact gctgagacca ggcagaagag
361 aactgtgaca tcagcactgc tgggatcata caggagagga ctgtgacgtc agcactgctg
421 agaccaggca gaagagaact gtgacatcag cactgctggg atcatacaag agaggactgt
481 gacatcagca ctgctgagac caggcagaag agaactgtga catcagcact gctgggatca
541 tacaggagag gactgtgatg tcagcactgc tgagaccagg cagaagagaa ctgtgacatc
601 agcactgctg ggatcattca agaaaggact gggacatcag cactgctgag accaggcaga
661 agagaattgt gacatcagca ctgctgggat caaacaggag aggactgtga catcagcact
721 gctgagacca ggcagaagag aagatagtat ttctattata atgcatggag tgtttttgga
781 atgtcacata aataatatgt tttaggtaaa tatttattat atttaataat gatgataatt
841 taatagcagt cattttattt aagcggtcat tacgtgatgg attctactaa attctcttat
901 ccatgtagtt ttacatacca gattaaattt taaagtacat gtcattagct tcagtttata
961 tatgaggaag ccgattaaaa agataaacaa tataatcaat gtgttttgat ctattatgaa
1021 cagaagaacg gggttttaca tttgaatctg tttgacaaaa aaattctttg ctgataattg
1081 cttcattagg aaaactgatc ggagtgctaa gattagaatc attattttaa aaagagaatt
1141 gaaatggcag catccatcat tagatgctgt gttatgtata ttattccaat tatctcactt
1201 aatattgaga ctgtgtagtt aataaactgt gttctgtttt ccccttgtgc
//