LOCUS AK020045 1212 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
enriched library, clone:6030400A10 product:unclassifiable, full
insert sequence.
ACCESSION AK020045
VERSION AK020045.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1212)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=6030400A10
FEATURES Location/Qualifiers
source 1..1212
/clone="6030400A10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:6030400A10"
/db_xref="MGI:1910832"
/db_xref="taxon:10090"
/dev_stage="13 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="testis"
misc_feature 1..1212
/note="putative"
/note="unclassifiable"
BASE COUNT 369 a 198 c 233 g 412 t
ORIGIN
1 gacttaatgg ttaaagatta ctattattgt aagtcactgt tgtatgtcaa tatttagtgc
61 tcatcagctt tttaagaaag tcacattata tgcggctgtt taaaatatca gttttaatta
121 tttagaatga cagttagaat gtttatgttt ttgagcatat aatcctaaca tatgtaatat
181 cagggaaaaa gtattttctg caggaataag ggaaaatgtt atgtatgtca aatatttgtc
241 tctatttgga ttgaattgca tttcccccct tctttcctaa aagaaaatta gatattttta
301 ttagtacatt gacacaaaag gggaacagac agaacaaagt atgagatgag ggacctggtg
361 ctagcaagct agtttgaagt ttaaatttgc atttataatc catccatata ccatttatgt
421 ggtgacgcgc ttgtcttatt ttggaggtga aatgaatcat gggtatcttt taattaagga
481 aattcaccca gtgcatagtg tgcacacctg ccatcctagc actggggagg tatgagcacg
541 aaaatccgga gtgtatgata atcctcaaca gcatagtgag gtggagacca gcttggcttg
601 atgaaaccct gtttcaaaaa aacaagccca ttattgatgc tgtacttcta aaggtggatg
661 ctctaatcta ctatatcaat ttatgaagtg aggaaacatg ggtagcctta aattgaggct
721 gctcacacca gggagtgtga atgcagttga tgatgatgtg ggattttgaa gggagatgtc
781 atttggagca tgggtctttt tcttttcagt tttgccctgt gaatgttaga gaaataatac
841 tggctttagc ttctcatcca tagaatttta acctctattt ctagcttatt ttgtattttt
901 cttcctatgc tgaagtaatt ttgctacact gagctgagaa ccagtagtta ggccacaaag
961 cccctaaaca gctgttttgt ttccttctcg ttatctggtt agaacctaaa gaccatcatc
1021 tgtaccccta ccccaaatgt tagcgtcctt ggtataaaag tcttcaaact acctcagagc
1081 ctccttttta tataaagagt accagcaatc tatgaagagt tagttacttc cttataaatg
1141 ttttataaaa tatattttga agaataaatc acttgaaatc atactgtttt tggaaatcca
1201 aactgtttaa ag
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