LOCUS AK020044 1378 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930436O19 product:unclassifiable, full insert sequence. ACCESSION AK020044 VERSION AK020044.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1378) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=5930436O19 FEATURES Location/Qualifiers source 1..1378 /clone="5930436O19" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:5930436O19" /db_xref="MGI:1910831" /db_xref="taxon:10090" /dev_stage="13 days embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="forelimb" misc_feature 1..1378 /note="putative" /note="unclassifiable" BASE COUNT 388 a 256 c 274 g 460 t ORIGIN 1 gttaactata aagcatttaa atgttctaat gccatatact aattaataga ggttgctatt 61 tatgatctgg aatgatttca tagtacaaaa atttagtctt tattctcata tttgtagaat 121 gaaaagtcca tgagactgta ggcttaaggc atttaaaaaa tttaacttgt tggaataatt 181 tagtacatgc agtattacct aacatgtctc tgatagtgcg actctgttat gtagtgtaag 241 tgctgctggt agtacttcaa gactctctgt gtgtgttcct ttcccttccc ttcctttccc 301 ctcccccccc ttccctctcc ttcccttcct ctttccctcc ctctctcctt cttttctttc 361 ttatgacact ccttgaaatt ttaggaaagg caagaaccac catcagatgt tctcttaata 421 atgagagtct gccttccata tcttagattt ggcagagttc aggtctcatc ctggagtgtc 481 ctgtggaggg ggctacctct aagacccctg taccaaagtc tcagtcctga cagtgcagaa 541 tctgcatgta aattgtatat atcctgccgt agacagtgga tggtctctgg actattcata 601 acaatgcaag tctgtgcagc ttgtaaacac cgtcttatgg gcatagtaag aaaagggctc 661 acatgcatga aacagtctgt ctgtcctgtt ttatgagata ggttctctaa tatgtagctt 721 ttggctaaca tgaaaacttt atatggaggg ctagtcaatt tggggactta aatttttttt 781 tttttttttt tttaatgctg gaaatactta agaccttgcc atggtagtat atgcctttaa 841 tgttcaggaa gcagaggcag ggtgatcttg gggttccagg ccagccaggg ttataatgaa 901 actgtgtctt taaaaataaa aaaagaagga aggaaaataa ccagcctctg ggttatttca 961 gtgtaagagt cttgacttcc agtttctctg ttactaataa gggactctta ttttgtatag 1021 atcctgttcc tatctctgaa gcattctgat tttcacttat tttttttaac ttgaatatat 1081 tcttctaaat gatgcagatt aggatgtgcg attggtggca ggtggtcctc cccaaattgc 1141 atttgttgtc cactggaaac aaaatcatga acacacaaat ataaggatgt ggcagatagg 1201 cagttactgt gaagaacata gctgttacaa ggcaagtggc acagtatgat ggagtactaa 1261 taaagtctta aagtctttga agagagatga gcacttagac tatacagaag tgtaagaata 1321 aaaggatgca gactacctag catccaataa ttgttcagta agacaggtct tggaaatt //