LOCUS AK020044 1378 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
enriched library, clone:5930436O19 product:unclassifiable, full
insert sequence.
ACCESSION AK020044
VERSION AK020044.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1378)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5930436O19
FEATURES Location/Qualifiers
source 1..1378
/clone="5930436O19"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5930436O19"
/db_xref="MGI:1910831"
/db_xref="taxon:10090"
/dev_stage="13 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="forelimb"
misc_feature 1..1378
/note="putative"
/note="unclassifiable"
BASE COUNT 388 a 256 c 274 g 460 t
ORIGIN
1 gttaactata aagcatttaa atgttctaat gccatatact aattaataga ggttgctatt
61 tatgatctgg aatgatttca tagtacaaaa atttagtctt tattctcata tttgtagaat
121 gaaaagtcca tgagactgta ggcttaaggc atttaaaaaa tttaacttgt tggaataatt
181 tagtacatgc agtattacct aacatgtctc tgatagtgcg actctgttat gtagtgtaag
241 tgctgctggt agtacttcaa gactctctgt gtgtgttcct ttcccttccc ttcctttccc
301 ctcccccccc ttccctctcc ttcccttcct ctttccctcc ctctctcctt cttttctttc
361 ttatgacact ccttgaaatt ttaggaaagg caagaaccac catcagatgt tctcttaata
421 atgagagtct gccttccata tcttagattt ggcagagttc aggtctcatc ctggagtgtc
481 ctgtggaggg ggctacctct aagacccctg taccaaagtc tcagtcctga cagtgcagaa
541 tctgcatgta aattgtatat atcctgccgt agacagtgga tggtctctgg actattcata
601 acaatgcaag tctgtgcagc ttgtaaacac cgtcttatgg gcatagtaag aaaagggctc
661 acatgcatga aacagtctgt ctgtcctgtt ttatgagata ggttctctaa tatgtagctt
721 ttggctaaca tgaaaacttt atatggaggg ctagtcaatt tggggactta aatttttttt
781 tttttttttt tttaatgctg gaaatactta agaccttgcc atggtagtat atgcctttaa
841 tgttcaggaa gcagaggcag ggtgatcttg gggttccagg ccagccaggg ttataatgaa
901 actgtgtctt taaaaataaa aaaagaagga aggaaaataa ccagcctctg ggttatttca
961 gtgtaagagt cttgacttcc agtttctctg ttactaataa gggactctta ttttgtatag
1021 atcctgttcc tatctctgaa gcattctgat tttcacttat tttttttaac ttgaatatat
1081 tcttctaaat gatgcagatt aggatgtgcg attggtggca ggtggtcctc cccaaattgc
1141 atttgttgtc cactggaaac aaaatcatga acacacaaat ataaggatgt ggcagatagg
1201 cagttactgt gaagaacata gctgttacaa ggcaagtggc acagtatgat ggagtactaa
1261 taaagtctta aagtctttga agagagatga gcacttagac tatacagaag tgtaagaata
1321 aaaggatgca gactacctag catccaataa ttgttcagta agacaggtct tggaaatt
//