LOCUS AK019250 754 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810030D12 product:unclassifiable, full insert sequence. ACCESSION AK019250 VERSION AK019250.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 754) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (18-AUG-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=2810030D12 FEATURES Location/Qualifiers source 1..754 /clone="2810030D12" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:2810030D12" /db_xref="MGI:1912278" /db_xref="taxon:10090" /dev_stage="10, 11 days embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="whole body" misc_feature 1..754 /note="putative" /note="unclassifiable" BASE COUNT 163 a 195 c 197 g 199 t ORIGIN 1 tgggagatgg gagcgcctag ggacccgaac caagtgcacc tgctgcagcc tggcactagg 61 gatttgaaaa tccatggaga tggaaaccta tgccgaggtt agaagacctg gatccacttt 121 gcaggatttt aaatatcctt caagcctcag tgcctggcag actggacttt ggacttcgga 181 cttccagctc cgatgctgaa aaaggagggt ttttttgttt gtttgttttt ccactttgct 241 tccttgcttg tcgaggctga gaacatacgg tgtttttgag ggccaccatc aaagggtact 301 cgcttctcca aaccttggaa cccgaggtct agccttggaa agagttgccg ccttaccatc 361 tctcctcgcc tagggaagcc ccagctgtgt gcgctactgc agggtcacag tgccgcggtg 421 ccgagcttct ttcgtggtcc ctgtcgccgt ccgtttcttg agatttcaga ctctgggctt 481 ggaaaccagt tgactgcctt tcttagcgag gtgccctcgg aaacctgtgg aggaatgttt 541 ggattatgaa tgctcaccgt gccgagtcct cgaagctatg tgacagaggt ggagcacctg 601 gaatgcatag agaaccaggt tccctttgga aaatattcac tcgcttccac cagcccaaac 661 ccgaaggtac catcagtacg tgaggcctac aacagggttc tctgttttcc tgtagccagc 721 ctctctgatg ctcccaacaa tgtatttgaa aagc //