LOCUS AK018489 1708 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male colon cDNA, RIKEN full-length enriched
library, clone:9030407C09 product:unclassifiable, full insert
sequence.
ACCESSION AK018489
VERSION AK018489.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1708)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9030407C09
FEATURES Location/Qualifiers
source 1..1708
/clone="9030407C09"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9030407C09"
/db_xref="MGI:1904079"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="colon"
misc_feature 1..1708
/note="putative"
/note="unclassifiable"
BASE COUNT 544 a 262 c 347 g 555 t
ORIGIN
1 tttagttaac atttttccta gcaatgacat ttcccatgat tgtttcccag ggcgcattat
61 agtgctttaa aagaccagag ccaatggttt ttgtggtcat attacaaagg ctctctgtta
121 gaaggaatag tagttagtaa aaggggtgtt aatgaaggca gaaaactcca tcacgttttt
181 gtctgtgaaa agagaaaagg gtatcttttt ttaaacaagt ctattttaaa atagtgtgat
241 atgtaacacc tttactaaga gtcgtaattt gttgggactc acttgaaatg ttagacataa
301 cagtttcttt ccttgttgag atatagtccc acaaagactc taggtagcat taaatgtggg
361 gcagtgatca gcatgctgtg gtgatatgca aggatcatca agttcagtgc ctggaccaca
421 gaaaatagac agcaggaagc tgatgctaga gaagcagaga tgggtaagga ggcagataag
481 tgaggagatg gtgttttgga cgatgcttag agggcatatt aaaggaacaa acatgaatat
541 aaagagccca ctaacgaggt tgctataggc atcctaagga tagaaatata gtcaggacta
601 ggacaattga ccacaacagt gaaaaatgta aggatgtaga atcatcataa attacagaaa
661 atggaagaaa aagtgttcca tgaccctagt actaaaatac aaccactaaa atttccatca
721 tatgttttta tatattgatg tatttgtatt gttatgggta taatgatcat ttatcttata
781 ctaacagaac ctagggagaa ctatgaagta ggtagtcttt cttttcacag tctagggttt
841 ttttgtttgt ttgtttggtt ggttagttgg ttgattggtt ggtggtttat ttgttttgtt
901 ttgttttgtt tttgtgatac ggcttctatc catcacttag ttcttgattt ctcttcctca
961 ggttctcaat atcttccttt aaatccaccc actttatcca gctctgcctt ctagctcctt
1021 taattcttgt accatcaata aggcatcttt ccagatacag caatgggata aataatgcac
1081 cccccaaagt atccacatcc tactatgtga aaaacattac caaataatct tccatgacaa
1141 aatggattgt aaagatgact taggagttgg agattgcccg gtaaattata attggctcaa
1201 tgtaaccaca aaaagatgga aaagggaaga cagaacagac ttgtatgaat atgggataga
1261 tttgagtttg tgatcatatt cttttagaag atatagaaag tagcatgaat caaggattgt
1321 aggttctctc ttttatctgc acaggtaagt gagtttattc tctcctagaa ctccaggagg
1381 aagatagcct tatcaacaag ctagtattag ctcatgatac ccaatttggg catatgactc
1441 ataggactgt aaaataaact ttttgttgct ttaatccaca catttaagct aactcatcct
1501 aacaacaata aggaaccatg acaattattt attgtaaaga atcttatggg tttactttta
1561 aatagattat ttaattaaca aagtttaatt tattcttttt cttaactcaa aagaattaac
1621 ttttatgttg tagtttcagg aaccagtctg gtgggagaga tgtctgaaac tgaaggcagg
1681 caggcaaatg gcatgtgtgt gagatgtg
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