LOCUS AK017417 1237 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched
library, clone:5430440L12 product:unclassifiable, full insert
sequence.
ACCESSION AK017417
VERSION AK017417.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1237)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5430440L12
FEATURES Location/Qualifiers
source 1..1237
/clone="5430440L12"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5430440L12"
/db_xref="MGI:1903911"
/db_xref="taxon:10090"
/dev_stage="6 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="head"
misc_feature 1..1237
/note="putative"
/note="unclassifiable"
BASE COUNT 280 a 253 c 296 g 408 t
ORIGIN
1 tttttttttt tttttttcga gacagggtct ctctgtgtag ccctggctgt cctggaactc
61 attctgtaga ccaggctggc ttggaacttg gaaatccgcc tgcctctgcc tcccaagtgc
121 tgggattaaa ggtgtgcgcc aacaggcctg gcctgaataa tgtattctga ataggtagag
181 aaataaagcc agtctatctg gagggctggt aataactaag gagactggat gggtaggttt
241 gttagaccac gaagcttgga tccccgtccc cggtttttcc tttagaccaa gtcacactat
301 ataggcctgg caagcttggg acttgctgta tagaccgtct ggcatttaac tccagcggtg
361 gtattgtctg gagactattt ccacttgggg attggtcaca gggtgagggc tgtctgtctg
421 tctgcacact gtggggatag tggttccctt ggcttgttag caggctcttc cccttcagac
481 cgggagccag tccagtttag tggagtgaat tggtcttgtt tgctactgga accccaacct
541 ccaggaattt tggcataaga aagatgatta aactgagaga aaatgatttc tataccctat
601 gcatttttgg gtgcatattg agatgtggct gtgcatttta gatccccctc tgaaagggcc
661 tgtgaaggac agcagaactt gtattacaga tctcaggtgg cttttactca gtctcaggtg
721 ctgcagaatg aagccatggc catatttaat gtcatattgt tactttttaa ggggcctatt
781 tcctagcctt aaattataga ctaattttct gctatagaat ccagtagctt attttctgtc
841 tctgcctttt gtttgacttt ttctttcttt tgtggcagtt ttgggaggta gtatgctcta
901 tttgttattt tactcccaat catcctgttc tcatgaagtt ccccctgctt tctgcctgtt
961 cacctttaag ttctccattc agcacctttc ccggttatct ccatcttaag aagctgcgtt
1021 gcagagggtc atgactaaag ttgcttgctc aatgagtatg ggattatgtg aagcagccag
1081 tgggtgagaa aaatgtgatg agggaatttg gaccctgtga agaatgttcg tttgtacttg
1141 tttacagctg attgtcacaa gccttttttc caaggtcagt tttagggaat ttaaacttag
1201 ttttggctaa tggagcccaa taaaaccaaa caaaatc
//