LOCUS AK017335 1184 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched
library, clone:5430425E15 product:unclassifiable, full insert
sequence.
ACCESSION AK017335
VERSION AK017335.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1184)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5430425E15
FEATURES Location/Qualifiers
source 1..1184
/clone="5430425E15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5430425E15"
/db_xref="MGI:1903940"
/db_xref="taxon:10090"
/dev_stage="6 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="head"
misc_feature 1..1184
/note="putative"
/note="unclassifiable"
BASE COUNT 334 a 255 c 285 g 310 t
ORIGIN
1 gaattgttga gcgggtgtgt tggaatgggt gttttcctaa atctgcttta gatgcaagct
61 ggcaagaccc tttggcatct gtgagaagca tcatgcatct ctgatctgcc tccacatctc
121 cttattggaa ttgcacagag gagggagagc caatgacctt tactgacaac tggtacccac
181 ggtcagagca aatctccacg gttgtgggga aaggagcagg ctgctgccat gtaataccag
241 tactgtatgg aggttcaact ctgacagcaa cagaatcaga tttccacatc cttcatgctg
301 cattgatgtc tatgatattt taatacaaag agacgctgga cttggccagt gagaaagttt
361 gctgttttat tttcagagca tggtgacagc agtggtggaa agaaccccaa gtctgcaagg
421 aactgctcgt cgcaactctg gaaagacttc tatcagaatg aatggcatgt caggaagaca
481 gaaaataggg tgcaacttag tctcggatgc ttgcatttgt tcctgggatt ctaaatctac
541 ccagcaagga ctcactccat caaacatgag gctgagcaga aagaatcttt cgggattata
601 attagaaaat tcacaatcag aattcctttg taaatggagg taggatattt gaaagcaaaa
661 gtcgatgctt gaatgcgccc ccaccccgca aggtacccag ttcatctccc acctacattt
721 ctattcttgt ttagagaaca ataggtggaa cattctgcta agtgtgtgga agggaagaaa
781 gacagcaggg aaggggggca gaggggaggc cttcatccca tccgcattac ctagagtttg
841 attgactatg cagccaagtc tcttttcaga tgttcaagtt tgaaaaggac tggagacgtg
901 cctgagaagg acccaaagca gatgccaagg aggaagtatc tgcatccaca cccaccaagg
961 cccctgtcat tggaaaggac tacttgggac actacatcat gtggggcatc taatgccaaa
1021 tgcgctgtga tctgcctctc agtgcccaat ttcagaagtc atcaggggtc gttttcccaa
1081 agtatgaggg caacattttt ttttcttttt ttcctctttc cacaaaaagt ttaatgctaa
1141 tcaaagcaga atgcctaatc agttcaagat ggcctgtcag cttg
//