LOCUS AK017242 1192 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male pituitary gland cDNA, RIKEN full-length
enriched library, clone:5330417H12 product:hypothetical protein,
full insert sequence.
ACCESSION AK017242
VERSION AK017242.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1192)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5330417H12
FEATURES Location/Qualifiers
source 1..1192
/clone="5330417H12"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5330417H12"
/db_xref="MGI:1910272"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="pituitary gland"
CDS 298..630
/codon_start=1
/note="hypothetical protein (evidence: CDS)"
/note="putative"
/protein_id="BAB30647.1"
/transl_table=1
/translation="MVFKAVKRKAYELAQRRIEEHLGHPRTLQHREKMQPGRFQMRGE
EKRVFPEASEETEQNNQVCLRCYVKPGSIFSPGLASGELICFCSLGWLSITSPRGLQK
LPLPLPLH"
BASE COUNT 309 a 293 c 302 g 288 t
ORIGIN
1 gagctaaaca agaagagaag gtagtacggg cagggacagt tataggagat gccatatgtc
61 ctgactgaag tccagagcga acgctgtgaa atttactgac agactgcact caggcgtgag
121 agaagcagag tctgacagtg aggttcaaac ccgaagtccc cgggagaaca ggaagagcca
181 agtggcatcc aatcgggacc tggattttag gaaggtgtgc taaggggcca cctggagctc
241 tgagtcttgg gttgacagag aagtcttgac agcagtttga gagtcatcta cagagagatg
301 gtatttaaag cggtcaaacg aaaggcttat gaactggcac agaggagaat agaggagcac
361 ctgggacacc ccagaacatt gcaacacaga gagaagatgc agccaggaag attccagatg
421 agaggtgagg agaagcgggt gtttcctgag gcatctgagg agactgagca gaataaccag
481 gtgtgcctac gctgctatgt gaagccaggc agcatcttct ccccagggct ggccagtggt
541 gagctcatct gcttctgcag ccttggctgg ctctccatta cctcacccag aggattacaa
601 aagctgccct taccactccc cctgcactga agactcagcc actttagcgt cctcaaactt
661 tgatgtttat caggatcttc tgggcagctc actgagctga gccccagctt ccatagcata
721 gataaggacc tgaactctgc tgggaacttc ccaggagctc agcagcagac acaaggtggg
781 atccatggcg ttttatattg tggaatcaac ccactaggtt ggacggttaa cttccatcat
841 gacttttcac agcctcctgc accgtcctaa cccaatctgg tgtggtcctg accagttgac
901 agctcactgt cccctctctc tctttcctgc tcttatgccc atgacaaggg ctttccttgc
961 tgagctctga ccttcctctc aagccaatag tttcaggaaa ctaagctctg tcctgcccac
1021 ctacatgtga tttatttctc ctgatatctt tcatcctgca ggaaaaggat gatagcagtt
1081 gtatgcccag cgtcttccct cctggcctgt ttctggactc tggagtatca actctgtaat
1141 ctatggagaa atgtttatat atttatggat gaaaataaat ggactcattg tc
//