LOCUS AK017208 1206 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 11 days pregnant adult female ovary and uterus cDNA,
RIKEN full-length enriched library, clone:5033430J17
product:unclassifiable, full insert sequence.
ACCESSION AK017208
VERSION AK017208.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1206)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5033430J17
FEATURES Location/Qualifiers
source 1..1206
/clone="5033430J17"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5033430J17"
/db_xref="MGI:1909444"
/db_xref="taxon:10090"
/dev_stage="11 days pregnant adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="ovary and uterus"
misc_feature 1..1206
/note="putative"
/note="unclassifiable"
BASE COUNT 370 a 209 c 252 g 375 t
ORIGIN
1 gaaaagagct ttgcctattt tattttgaac accaaagtat tattttggga acacacatta
61 atctgaagtg accttagtca ctgctgtttt ggatgctaaa ggaagtcaac tgaggtaata
121 gtatttttaa ggttagagag tggctttaaa aaaatctagg aatatttcag gacctctgac
181 ttcatagtaa caagtattag atttcttggt aaataagact tttaaagatc atttaaaaat
241 ggaacaaatt aaggacctta tttaagtaac ttaggtcaaa gtgaaggggc tgtgtcttga
301 gaagctcaga gtgaaagggt cctcacagga ataggtgtaa aatgctgctg gcactgaaga
361 attaagtgac atcctataga atgggaacca gagactagga acactggcat cgcagttggt
421 gtcaatttct atgtggacgt atcagtgcgt gtattttata tgcatgtaat tttgtatatt
481 actatgtaaa gaaattaatg taaaattaat atatataata tatagcatga tctaccacaa
541 tagaacattt atacccagtg atgtcctttc atttgcctca tttatcctta tttatctcca
601 aaactttaat ggctatcttt caaatgagct gattgacaat cacttatact tcaagtcacc
661 ttctgatcca gtggaaatgt caagaaatat ctttgtgatg tattactagt ttggaccatt
721 gcttcagtga ttttattctt gtttctcatt tgagcttttg tgatttgcaa gaaccaaagc
781 aaaatacagc gatcagaaaa gtagtgaatt aaagtacctt caataaatgt cgctagaatt
841 ggtgagggac tctgcactag ggggacttga gatttgaggt caccttgtat ctgggcatgt
901 gccaagtttg gagatgtatt gtttccatta cagttgtatg tggtcagccc agaccagatg
961 ctgctggtaa cagtggcaaa gccctggcac aggtatacag aaatcctctt tggagacagc
1021 tcgatctcat cctgtcaacc tacgctttca acgcagcaag cagagatttt ctcaggggaa
1081 acatttaagg acagagcaca cttcagctct tcttcctctc caacctggga atgtgggtgt
1141 ctgaccgccc tatggggcat cttgccagca aatcattgta gtcaggcaga gaaatttcaa
1201 ctaagg
//