LOCUS AK016081 1713 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4930549O18 product:unclassifiable, full insert
sequence.
ACCESSION AK016081
VERSION AK016081.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1713)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4930549O18
FEATURES Location/Qualifiers
source 1..1713
/clone="4930549O18"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4930549O18"
/db_xref="MGI:1908661"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="testis"
misc_feature 1..1713
/note="putative"
/note="unclassifiable"
BASE COUNT 426 a 403 c 452 g 432 t
ORIGIN
1 ggtctcctct cctgaagctg atcatctgtc tctcgggatg aaataaagct tactgcagaa
61 ggatccgagt ggcctgcgtg cgttttgctg gcgagacggt agcgtgggtc atctggtgcc
121 ggaatcccag gaattaacat cgctggtgtt ggggagaacc cccggaaacg gggcggattc
181 agaactgcag ggaaaaggaa gaagacaatc ctctttgggt tccagaacgc ctcacccgaa
241 ggatctcccc ttcagaagat gtggacaaaa gagggaacac tgaaacaacg atagatactg
301 acccttctac cggagatcct ggttcctagt atatcagggg aattgcgttg ggtattatgt
361 ccacctttcc ctgcccatgc ctgtcatgca cagtgcacaa gtgagcagtt taagcttatt
421 taaagaaaag agagatttta gaatctctgc tattatagtt gtcttggtag caacagaggc
481 aatagctgcc tctatcactg cttcggccct tgccttgtct gctacggttc agacaacgcg
541 aaccatcaat gatctttcgg caagagtgac atcggccctg gacaggcagg ccacggccaa
601 ctcccagata tagggaggcc tcatgttggt aaaccaacgg atcgatctgg tccaagaaca
661 ggtggatatc ctgtggcaaa tgacttagct gagttgcgaa cataagctgc ctagcctctg
721 tatcacctca gtacaatttg agaatattat aagagcaatt aacctgtcaa aggctctgtc
781 tcgttatgtg ttacagatat ggaccataga tattgaacag acactctggg agctgagatc
841 gccacgtctg gacctgtcat tgacggaaga ttttctacct ggatttctgc agcattctcc
901 tacttaaagg aatgggtggg ggtggatttg tttggagtgg ctgtgtgcgg tggagtactg
961 ctcctactat ggatgatctg caacttaaag cccaaacaag gaggtacagg atggtagtaa
1021 cccaggcact tgttgctttg gagcatggtg cctcccccaa tatatgatta tcgatactta
1081 agcaataggt cgctggccac tcagctcttg caccccacga ggctagtctc attgcacagg
1141 atagagtgag tgtgtttcag cagcctggga gagttgtacg gctaagcact gcagtagaaa
1201 ggctctgctg cataaaatga gcctattcta gggagacatg tcatcttgta tgaaggttga
1261 gtgtccaagt gtccttcccc caggaaaaaa cgacacggga gcggaccaaa acccctccgg
1321 gtgacgagcc tgggaggagg ttttgtgtaa ggcccctatg cttgcacact ggggatttga
1381 cctctatctc cactctcagt gctgggtggc ctgttgcttc taaataaaag aaaaggggga
1441 gatgtgagga gccgccctca cagtcgccgt tacaagatgg cgctgacatc cattgctcgt
1501 agtaaatgtg cgcaggcgtc agggtatcat tccattacct gagccctgcc tttctcgtgg
1561 cgttaactga ctgatagtgg gcagccaatc ccagtggtgc acatctccaa ccgttttttc
1621 acagcctata aaagggaagg gttttctgct ctctgggtct cctctcctga agctgatcat
1681 ctgtctctcg ggatgaaata aagcttactg cag
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