LOCUS AK015981 1510 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4930535F04 product:unclassifiable, full insert
sequence.
ACCESSION AK015981
VERSION AK015981.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1510)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4930535F04
FEATURES Location/Qualifiers
source 1..1510
/clone="4930535F04"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4930535F04"
/db_xref="MGI:1908498"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="testis"
misc_feature 1..1510
/note="putative"
/note="unclassifiable"
BASE COUNT 453 a 291 c 264 g 501 t
ORIGIN
1 gcattcagac anaaaagtct ataatatggg gaaccactcc cttggctttg ggaaccactc
61 ccttggcttt ggatgaagag cagtccagga actacagact cccctgtgtg gtgtagggtt
121 gtatgcagaa aggaaggtgt gggaaggagc agaggggtga gcatggtgga atggagacaa
181 agcaagacaa ttttagagct acttctagcc cacatgggcc tctttgaata aataacaagg
241 tatgtccagt ctagtaagat gaagcccatg caaacctgta caacagagca caggctccat
301 ttagtcttca ttcctcctca ctgtgcacat ttgtacaata ggcagcctgg gagaaacaaa
361 cacggttgtg ttccagacac tgtaatgata atcagggaca ttaggattgc tttggcagtg
421 cttaataaat gcttaggaat ggggtctagc ctcagctggc agttatcata tgccagctgc
481 gccgcaaaag caagaagcca aaggaaaatg tccaatgaat tttcctttga ataattatat
541 tggacattgt gctcagtgac ttgtgtgttt tgtgggaaaa ctgtatgaaa ataatatcca
601 agggcagtgt taaaaagaag ttattactta taataaccgg aaggaactta gcacttaaag
661 actaaactat attttaagct acagtcctat tatctttatc tagcaaattc atatgagcag
721 gagcatattt taagtaagag aacaacctct ggaaccaaat atgaaatgca cagagaaatc
781 atggaaaaat aacttccttc ttctattaaa tgtcatgata cagtcaaagt ctatttattt
841 aatttgctgt tttcttttcc tttatataaa ttctttgaga atctcataca catatatatg
901 tttttattat tctttttttg agattataaa tatagttcat tatttatccc ttccctttat
961 tcctttccaa ccctcttatt catcccttct tttggattag tggcctcttt gatcattaat
1021 ttttctcatg tacatacata tgaatatatg catatgtatt cataaataca aaatggcacc
1081 ctgctcagtc tgtgtaatag tgcctgtaca tgtgaatatg tttttaagga tggccatttg
1141 gtattagata atcgtttgct gtactcttcc tagggaaaac tatttctccc actctctgca
1201 ttctttaatt ttctgtattt ctttgtgtgt tttcatcaca tctatatcca ctcctctttc
1261 aactccactg gaacattccc tccatcttct tccctactgg aacctgccag gagccatatc
1321 cctgaagaaa actgactaac catctcaaag aagctatcaa ttgacaataa cttttcagtt
1381 aatggttagc cctcatgaag ttctcaccaa atggtttgtt cacaggacaa ttttatttca
1441 aaattttatt tattaagcag ttactcatat tccttgtttc agaataaaaa tcattatttg
1501 tttctaaatt
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