LOCUS AK015862 1768 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930521G14 product:unclassifiable, full insert sequence. ACCESSION AK015862 VERSION AK015862.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1768) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=4930521G14 FEATURES Location/Qualifiers source 1..1768 /clone="4930521G14" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:4930521G14" /db_xref="MGI:1907910" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="testis" misc_feature 1..1768 /note="putative" /note="unclassifiable" BASE COUNT 558 a 282 c 422 g 506 t ORIGIN 1 cagaactttt gatccactta tttcaagacg agttgaaggc cacagtcaga attcaaacat 61 accaaggagg agaaacttca aatttcagag caaaaaagtg attgagagca ttgtgattgt 121 tttaagactg aagaagagaa acaaaggact aggctagatg tatctccaaa tactggagag 181 ttgaagagga aactagaccc atcccctgca ctctcaatgg aaagaattaa aaccaacaca 241 agggacaaaa gtagacattt cagttcagca tgagtaaggg atgggtctgt cactctaact 301 atggtgaaga taagtggtgg ccatggaggt gatgctatct gttgcccgat gtgagttgtt 361 gggaatataa aatgcataag tcatagtttc tttcttcaag tgactctcaa tgcagtgagg 421 gaaaggcata aaggttgaga cagccataca cagaagaaag cagcatgtgt catccgactt 481 gctcactggg atctaagctt cttggggaca aatctgtttg aatccctgat acctcatctg 541 ttcttggtgc acagaaaaga ttccatatat tcatgttggc tgatttgtac tgacagttgc 601 aagtttactc tggttgtgat ttctgtattg gaatcctaaa gagaaggcaa ttgcagcaac 661 acaggaatga tacagggatt gtgtaactgg caaaagcagc caagacaaaa ggatggaggt 721 gcatttgaga ggtatttcag gtatgaaatt tatgggattt ctgcgactga tgtgatgtgg 781 gtggggggtg gaactggcaa acttgttacg gtgagaagct ggtgagtcat ggcaaccaag 841 caggatttgg aaatagaggg agtggagaat ttggacgctt cagcagagag agccttgtat 901 agggcatttg acactgaata atggtttgtg tatagaccac aattatatgt catcagtgca 961 cactagggtg aagttagtgt ggatgaagtc agcgcaggca agtgggcaaa gtaaagtaag 1021 aagagtgagg ttaagctctg ggaatgcacg tgttaaggag gttgaaggtg aacactaaat 1081 aggaagtgat cccaaggaaa gctccagttg tgaaggagta tacctacaga actcggcact 1141 gaaacatgaa gcagggttcc ttcacaaaga gatggccagt attcattggc aataccattg 1201 ttaacgcttc caatgacaag acataactgg gggaatggtg agtattgagt ggacagatgg 1261 tgatacatct gaaaaacctt tcataggaac tctcagagtg gggtagtctt tccatgttta 1321 aaacatacaa ataatctccc ccagatcact ggcaatggga tgttcagaaa aaagtttaga 1381 tggctatgtt gaaccatttt atactattgc ttttttttaa tgtgacatgt caacatgaat 1441 gcacatattt gtatattttc tttttttaat ttattatttc tatagggggc tctgaggttt 1501 taaaatttat gtatttcttc tccctcttct aggtttgact aaatgaaaat agaaattcat 1561 tgttgaaggc tgcttcattt aatcagtttg cacagaaaaa gatatggtca acctgacatt 1621 caatgctcat ctgacatctt ataatgatag gatgtctcac tgtaaggctt cataagttct 1681 taaactctta gtttactgtg tgttttgtgt actgaaccaa acatagacat aaacaaatat 1741 atggaaatac attcatttct ttttctcg //