LOCUS AK015850 933 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930520E11 product:unclassifiable, full insert sequence. ACCESSION AK015850 VERSION AK015850.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 933) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=4930520E11 FEATURES Location/Qualifiers source 1..933 /clone="4930520E11" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:4930520E11" /db_xref="MGI:1897358" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="testis" misc_feature 1..933 /note="putative" /note="unclassifiable" BASE COUNT 276 a 186 c 250 g 221 t ORIGIN 1 ggtctcctcc ccgcaccctg ttccccgcac cggcagagcg ggcagctccc gaggctcgta 61 ccggaactgt ggccttctcc cgggacttgg aggaccgcct cggctgagga agtgaccgag 121 agaagagagt ggacaggact cacggaaaca ctcgagaaga ttctctcagt gccatcccca 181 gagtggctgt gataggataa gccaagtaag ggtgatgtgg aaaccgttgt tccaagttaa 241 tggtgatcgc ggataagaat tgttttgtgt ttctgttgtt gagacaggga gggcatcact 301 gtgtaaccca ggcttgcttg gaactctttc gtggagcagt ttcgaacttg agattcacct 361 gctccttgag tctctcaagt gctgagagta aaggtgtgtg ccaccacacc cagttggcta 421 agacctttta atttgtgtct taatttttca ccttggctga tatttttcct gaccttgaag 481 gggatgtcaa cggcctggac agcaacgttg aaagaattgt gggtacggtg aggagaaaag 541 tgaagtaaaa gagagcaccc cagaaaactc tgatgaaaaa agtcaggaat cctgatagct 601 gaagaaaaat aaaatgaaga gacgagagat agaagaaaga ttgccgatat tcccagattc 661 gatggaagaa tgaaaaaagg agaaataaaa cagatacttg gacttgggat gttgaagcag 721 gaggatgagc gattgttatg cagccgggtg gaagccagcc tagaataaag tgtgagaatg 781 aaaaaaaaca cataatgaca gacataatgc agagtcaaac tggctggtca cacacagttc 841 agatttcatt gataagactg acggaatccg tttaatattg ttactaccta aggcttcttt 901 ccagttacag tcattctgag aacattgcac tcg //