LOCUS AK015626 2291 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4930485G23 product:unclassifiable, full insert
sequence.
ACCESSION AK015626
VERSION AK015626.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2291)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4930485G23
FEATURES Location/Qualifiers
source 1..2291
/clone="4930485G23"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4930485G23"
/db_xref="MGI:1909221"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="testis"
misc_feature 1..2291
/note="putative"
/note="unclassifiable"
BASE COUNT 774 a 490 c 403 g 622 t
ORIGIN
1 aaaaacccac aaaaaggcgg ctgcggcaca tcnggagcgc naacagcccg gagcagcgtc
61 aggacccttg ggttccgccc acggagccga agccgtagcc ttttcgcatt ttagtaatcc
121 agaaagaact tatgaagctt ccagaatcag gaaaggagag acaggagaga ggtacacaat
181 acgctcaatc ctgtattcga agccttcgtg aaaattctga aaccactgcc ctccaggcct
241 ttcccaacaa gactcttcag cctttcccag agacttctca ccggccccgc ccctgccgta
301 cccagcccca cccacatgaa gcttcataga cctcctggct tcgcaaatcc ttcaaaaaaa
361 aaaaaaaaaa aaaaaaaaaa aacggaggac ctcctgtaca aagtgctatg gggttggaaa
421 gtaccagaac actggaaaag cttgaagcaa acaccacgaa agaagagtaa gcaattttcc
481 aatattcgcc aacaaagaac actaggaaaa ttcgagaaag ccttgttgag cgcagagaat
541 ggaagtttat gcctatattc tcaacactga ggctgaagca ggattgctgc gagttcgagg
601 ctaacctgaa ttctatagtg agttcacgtt ccaaagtagg ctaggctgcc aagacaccgt
661 gctggaatga aaagcaaagc aaagaaaggt tctataaagg aaaaagagct gccactaaat
721 tgcctgatac caagatgaaa gatgtcttaa aaagaaatgg tcaagaatat ttttgttgtt
781 gttgttgctt cttcaagaca atgaagctta aaaatgtaaa gaaaacatta accaacaatg
841 tatatttttg ttgttgttgt tgcttcttca agacaatgaa gcttaaaaat gtaaagaaaa
901 cattaaccaa caagtatgtc agacaattgc caaactaagt cagagagcaa taattctcaa
961 ccaaacatca aaaattttag gtttttttct ctaccattta ctactttcat gctgctaacc
1021 taccagtaaa tgtttaaagt gaaaaggagt aattacgaaa taattaagta gaaaacataa
1081 aatgcagtcc atattcccaa ctttttcact ctcaagagat aatagaaaaa cttattttgt
1141 gctaagtgac aatacaaaca ctttgaagga aaccaagaat gtaaggatgg agccaagagg
1201 aaggacaagg atagccaaca gggttgatct gacttgcttc gtttcactta gctatttatt
1261 cctgaggaga tacgcaacac ataggcagaa actgaactaa agtttacaga cttctgaaat
1321 ccatgattca ggaaaaccat tcaagatctt agaagactga aaaccatttc tttaacacgt
1381 tcctcttctc tgactcaaga acctttccta ctaaaccaag atgccttctc gagggttata
1441 atggtttctc aaaaaaatct catttttctg agactaaaat ttgagtttat ttactagtaa
1501 aatgtctgcc cctaaggtat gaatgactcg gtagcatctc aaaaaaagac aacccaaata
1561 gcatctctaa ttggaaaaat ctacgagaac aacttgcatg ggaaagtaca acagaaatgc
1621 tctttggtgc tctttccctg ctccaagcaa acatgaaata ccagatttca attttcaaca
1681 attactgatt ttcattactg agtagctagt ttcctgagca tattgtcaat cactttccca
1741 aaatcctaag aatgtctgcc ctcacattca gggctttctc attgttttct ctgaagacct
1801 cttctcacaa tttctagagc ttcttgcaga cctccattgc tgactcaaaa ggcatgactt
1861 tcttacaact ccatctccct acaggtgaca agatttacag cttgctcacc ctactgcttt
1921 tctctcaact actgaaatgg tcctccagat taatttgttt taggtaacaa caaatttcta
1981 agatgcagca ttagatccct taataggtac aatacccata agttttcaaa gtggagtcta
2041 gttagcctat aaaaagtaag agtctgagag ttctttgagc atttgtgttt ttatattcta
2101 atctacaatt aataatatag ctatacttat ttcagtgatt cagtttagat ttaccaagta
2161 accatttttg cttatagtag ggtttcatgt atcccttgct ggcttcaaaa tcactacgtc
2221 aaagatgact gaacttctga tcctcctggc tccacctctg ggtacaaata aatagatggc
2281 actgctaaaa g
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