LOCUS AK014495 2546 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched
library, clone:4432414F05 product:RIKEN cDNA 4432414F05 gene, full
insert sequence.
ACCESSION AK014495
VERSION AK014495.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2546)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4432414F05
FEATURES Location/Qualifiers
source 1..2546
/clone="4432414F05"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4432414F05"
/db_xref="MGI:1910778"
/db_xref="taxon:10090"
/dev_stage="14 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="liver"
misc_feature 1..2546
/note="RIKEN cDNA 4432414F05 gene (MGD|MGI:1924277
GB|AK014495, evidence: BLASTN, 100%, match=2546)"
/note="putative"
BASE COUNT 776 a 580 c 530 g 660 t
ORIGIN
1 tctcaacatg ctagtttagt tcattttttt aaagtttatt taattgtttc caacaactct
61 tgttggcatt ttgtatcaga atagttgtac ttggagctgg aaagatggct cagtaggtaa
121 gagcctgtct tgctcttcca gagggaggca aatgtagtta ccaacaacca catcatgtga
181 ctctcaacac aattaaaaat agcaaaaacc aatcttaaaa agaaaacagg ccgggcgtgg
241 tggcgcacgc ctttagtccc agcacttggg aggcagaggc aggcggattt ctgagttcga
301 ggccagcctg gtctacaaag tgaggtccag gacagccagg gctataaaga gaaaccctgt
361 ctcgaaaaac caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaagaaaaca gttgctctgt
421 gaggttctag ttctctggcc ccaaagagac cagcagagag aaaaacacaa gtcaggatgt
481 ccactcatag gctcaaaacc ttacctgtca gtggcaattg agagaagcta tggaagacca
541 gagtatgcca gccaacagac taaagaactc tcatagccag ttatggtggc cagagtaaaa
601 tccctcccaa aacaaagttt caaaatcatg taaaagttta aagaattaag gtttagagct
661 ggagagatgg ctcagtggtt aagagcactg actgctcttc cagaggtcct gagttcaatt
721 cccagcaacc acatggtggc tcaccaccat ctctaatggg atctgatgcc ctcttctggt
781 gtgtgtctga agacagctta agtgtattgt attgtatata aatacaataa aaattaagtt
841 ttatatatga accatgcaag acttcttagc actgatgcaa agcccagcaa tgacactgca
901 gttgcacaaa gtggaggggt gggttccatg ctgctaaatc agtggcagaa aggctcccac
961 tccttccccc tgcttggtct gtctgtatgt gtgtctttct ctccctccct ccatctgtct
1021 tcgccctccc caactgtctc tctttctccc cacccccacc catgtgtatg tctgtctgtc
1081 ccagaaggag agcacttagt gcctcggcat taagggacac gtggtccatt ttgtgagcag
1141 ggaacagggt agagatgagt aaagttctgt cttggagctg ggctgagtgg taagaagctc
1201 acctgacatt cacaggaccc taggtgttgg gaggtagggt atcagctggt ctaaccatct
1261 tgacttggtt gcatctgatg aaaaaagaga aaagtaaaga tgaagttatt caaatacacc
1321 taaaactgaa agcctcacag ctgggtatgg ttcttggttt ggtcagtttc ctacactctt
1381 cctgttcagt aggactccac agcacagtga ggtttcctat agcaggagat ttcctaggct
1441 ctactggctc tcagcaatgc agacggatgc ttgtggagag ccagccgtat acactaacct
1501 gaaagttacc atccaaaagt gagggatcag attgccgctt tcccactttg caattacttg
1561 gaatggttgt tatagccaga tggtgcccca tacctttaat cccacactaa ggcataagca
1621 ggcagatctc tgtgagttca aggctagcct ggtctacata gcaagttcca gggctacata
1681 ataggctaga aaattggctc aacagtcaaa agcattggtt tcttttgcaa agtacccagg
1741 ttccatttcc agaacccact tggcagttca caactgtctg taactctgtt tccccgggat
1801 ccaatacctt ctttataatg gcctccatgg tacacataca tgcatgcaag caaaatattc
1861 atacacgtat gtaggcttag attttttgaa aacctacttt aataaaggtt cttaaatgct
1921 taggccttct ttctaaccca gcaaccaaag gtaagggaga aagagattac taggacaagg
1981 gggatgtgga cctgtttaga agtagttctt tggggcgatt ccaatcttca ttgtcaagat
2041 atcagcagtc cagtccaaaa catcaaacac aaatcaatag cagtagctaa atgaattaga
2101 aatcacaaga gtcctcataa gtgtcaggaa gcagccagaa taccacgaga agttcatttt
2161 tctctacaaa gtcacgacaa gggaatatca gtgaagacca gcagagcatt gcagtgcaag
2221 tctatgcaca agcacctttc actatctgct gtgttatact tacgctctct gcaaacatca
2281 cacatccttt caagtgtctg cctcagccaa acatcctctc aatagacctc gtccaggaaa
2341 acaccacatg acacaaccga gtctccaaag aaacctgaaa ttgccccttc acacatgaat
2401 aagtaatttt taactcaagt gttcagctgt ctcataagga atgcaaactc atgccttagg
2461 tgtgtactgt ccttttccaa tacctatctc tcctctaatg cttaagtcta tattaaaact
2521 cttgtaacaa aagaaaaaaa aacagc
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