LOCUS AK013916 873 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3100002H09 product:hypothetical protein, full insert sequence. ACCESSION AK013916 VERSION AK013916.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 873) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=3100002H09 FEATURES Location/Qualifiers source 1..873 /clone="3100002H09" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:3100002H09" /db_xref="MGI:1902559" /db_xref="taxon:10090" /dev_stage="13 days embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="head" CDS 47..469 /codon_start=1 /note="hypothetical protein (evidence: CDS)" /note="putative" /protein_id="BAB29055.1" /transl_table=1 /translation="MASPPDGGQNGNSMRVGDAVGWFVNVSALLNLAWLSVAAVVSVW VTEIGSILGLLQHSVPTGQVPDGGFGHRPSVWLWSEFIHSLTGDFLMSLKQSFFALVV PMEAIGPSCRANPKSVFSLTAGSPVLQSLRSSTNSSLA" BASE COUNT 214 a 186 c 245 g 228 t ORIGIN 1 ggacaccatg agtacttatg ggtagactca tggctctacc ctatttatgg cttctccccc 61 agatggaggc cagaatggga actctatgag ggtaggagat gcagttggtt ggttcgtgaa 121 tgtgtccgca ctgttaaacc tggcatggtt gtcagtggct gcagttgtga gtgtgtgggt 181 gacagagatt ggaagcattc tgggcttgct ccagcactct gttcccacgg ggcaggttcc 241 agatggtggc ttcggccatc ggccttctgt ctggctgtgg tcggagttta tacacagtct 301 cacaggtgac tttctcatga gtttaaagca atcttttttt gccctagttg tccccatgga 361 ggccataggc ccgagttgca gggctaaccc caaaagtgta ttttctctta ctgctggcag 421 tcctgtgctc caatctctca gaagttctac aaacagtagc ctggcttgac ttcccaggat 481 gaacacatca ccaggagggt gaaatggttg tcactgctgg atgggggcag caggtgccag 541 ctggccctgt gcctggctag tgggggagtc aatagcctag cattaggagc cgaattagtc 601 agtgttttct agaggagcag acaaaataca atgaaaaaaa tatatatgta gaacttatta 661 gagtagctta taggctgtgt tccatcatga tggaaaggcc aagaatgtga gacttgttca 721 ttccatagct gtcccaatct ggtgctggag tcccagagac gtcccagaga gctgcaaatc 781 ttcagtttac actgagatgc agaagtaggt tcaacctagg aatgcctcag caataggata 841 gatgaacttg caagagagag ggagggcaaa cag //