LOCUS AK012918 1641 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:2810047J09 product:unclassifiable, full
insert sequence.
ACCESSION AK012918
VERSION AK012918.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1641)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=2810047J09
FEATURES Location/Qualifiers
source 1..1641
/clone="2810047J09"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:2810047J09"
/db_xref="MGI:1905525"
/db_xref="taxon:10090"
/dev_stage="10, 11 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="whole body"
misc_feature 1..1641
/note="putative"
/note="unclassifiable"
BASE COUNT 390 a 333 c 339 g 579 t
ORIGIN
1 aatacttggg cctttagttt accttttctt tcttactgca ttggctacaa ctacaagcca
61 atgacatgta ataatgttgc gagtgtgcct cgctttgatc ctgagcgtct caggacctac
121 atcatggaat atgttgtctg atgaaacctt gaggtagata tcctgttcct ggtctactgg
181 gaggtttggt tttttttttt ttttaattca agtatatata gggtattcct atctctccat
241 tttgttttgt ttagtttttg agacaggctt catgcagcca ggtaacctta agttcgctac
301 gtacttgagg caggcctctt gcctcagcct tcaaagtgct gagattctag acttgtgcca
361 tgatacctag gtagaatatt agtcatttaa agatcaacca aaattaatca gttttctgct
421 ttgactgttc gttaacccaa ttgactgcat tgattaactt ctgagatgca attcatactc
481 catttgtagg ttgatggatg actccttaca gtgagcatgt tttcatggct cacctgtgtt
541 ttagcacatg tgtgtttcct tgattttcat ggctgagtaa cgtacagaat tttatttatt
601 cacttttgtg ttgtgtttct catttgagct atactgagta gtgctgttgt ctgctgtgaa
661 tgctgacgtg agatttcctg tggatctgcg ttacggtggt ttggaagagt aaatcagtcc
721 ctgtggctcc tggttggatc acttttcccc acttgtgaca ctttggggac attatgaact
781 gaggagtgaa ctggatggag gagttgaggt ttatacctgt ccactccctt tccttccccc
841 ctcttgcttc ctgtgtggga tgaaatgggt caccctggac accaggctga cctcgcactc
901 ctgcttccat ggtctcactg ccacagtgga ctgtgtgcac tgagactgtg agcccagata
961 aaccctttct ctccaaagtt gcttttgtca ggatattctg tcacaacaac agcaagataa
1021 ctaatacatg tgtatttaat tcttcagtat gtacccaaga atggaatttc tgggtcataa
1081 aaaaaaaaca acatagcttt ttggagatca gccaaaccga tttctcccca gctgcacttt
1141 ccacaccccc acaggcttca tagtggatgc tggtccattg atactcagca tgtgcctttt
1201 cataggcatt ctggtgttgt gaagtggcat ctcactgtgg ttttgtgatt acccgagttt
1261 gaattagtca ctgcaaattg tatgattctt tgctaatatt taattttgga tatttaggtc
1321 tatgtttgaa agtgagagat gtctgagctt tcttttggtt agcctttgta tcaaggctgt
1381 ccttacatta gcaaacaatg caggaagttt ccactctaat ggcatggaag cagctggacc
1441 tgatagtttt gatagaaaga gcccatctgg gcccgtccag ttttggaagt agttattcga
1501 taaccatttc aatttattcc atacttcaat gttggttcag gaattttcaa ctgctctttt
1561 agtcaaatct ggccatttat tttccaagaa aataatcctt acccagattt tcatttttaa
1621 gcatagttat atatagtgat c
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