LOCUS AK012918 1641 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810047J09 product:unclassifiable, full insert sequence. ACCESSION AK012918 VERSION AK012918.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1641) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=2810047J09 FEATURES Location/Qualifiers source 1..1641 /clone="2810047J09" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:2810047J09" /db_xref="MGI:1905525" /db_xref="taxon:10090" /dev_stage="10, 11 days embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="whole body" misc_feature 1..1641 /note="putative" /note="unclassifiable" BASE COUNT 390 a 333 c 339 g 579 t ORIGIN 1 aatacttggg cctttagttt accttttctt tcttactgca ttggctacaa ctacaagcca 61 atgacatgta ataatgttgc gagtgtgcct cgctttgatc ctgagcgtct caggacctac 121 atcatggaat atgttgtctg atgaaacctt gaggtagata tcctgttcct ggtctactgg 181 gaggtttggt tttttttttt ttttaattca agtatatata gggtattcct atctctccat 241 tttgttttgt ttagtttttg agacaggctt catgcagcca ggtaacctta agttcgctac 301 gtacttgagg caggcctctt gcctcagcct tcaaagtgct gagattctag acttgtgcca 361 tgatacctag gtagaatatt agtcatttaa agatcaacca aaattaatca gttttctgct 421 ttgactgttc gttaacccaa ttgactgcat tgattaactt ctgagatgca attcatactc 481 catttgtagg ttgatggatg actccttaca gtgagcatgt tttcatggct cacctgtgtt 541 ttagcacatg tgtgtttcct tgattttcat ggctgagtaa cgtacagaat tttatttatt 601 cacttttgtg ttgtgtttct catttgagct atactgagta gtgctgttgt ctgctgtgaa 661 tgctgacgtg agatttcctg tggatctgcg ttacggtggt ttggaagagt aaatcagtcc 721 ctgtggctcc tggttggatc acttttcccc acttgtgaca ctttggggac attatgaact 781 gaggagtgaa ctggatggag gagttgaggt ttatacctgt ccactccctt tccttccccc 841 ctcttgcttc ctgtgtggga tgaaatgggt caccctggac accaggctga cctcgcactc 901 ctgcttccat ggtctcactg ccacagtgga ctgtgtgcac tgagactgtg agcccagata 961 aaccctttct ctccaaagtt gcttttgtca ggatattctg tcacaacaac agcaagataa 1021 ctaatacatg tgtatttaat tcttcagtat gtacccaaga atggaatttc tgggtcataa 1081 aaaaaaaaca acatagcttt ttggagatca gccaaaccga tttctcccca gctgcacttt 1141 ccacaccccc acaggcttca tagtggatgc tggtccattg atactcagca tgtgcctttt 1201 cataggcatt ctggtgttgt gaagtggcat ctcactgtgg ttttgtgatt acccgagttt 1261 gaattagtca ctgcaaattg tatgattctt tgctaatatt taattttgga tatttaggtc 1321 tatgtttgaa agtgagagat gtctgagctt tcttttggtt agcctttgta tcaaggctgt 1381 ccttacatta gcaaacaatg caggaagttt ccactctaat ggcatggaag cagctggacc 1441 tgatagtttt gatagaaaga gcccatctgg gcccgtccag ttttggaagt agttattcga 1501 taaccatttc aatttattcc atacttcaat gttggttcag gaattttcaa ctgctctttt 1561 agtcaaatct ggccatttat tttccaagaa aataatcctt acccagattt tcatttttaa 1621 gcatagttat atatagtgat c //