LOCUS AK008071 1533 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male small intestine cDNA, RIKEN full-length
enriched library, clone:2010003K10 product:unclassifiable, full
insert sequence.
ACCESSION AK008071
VERSION AK008071.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1533)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=2010003K10
FEATURES Location/Qualifiers
source 1..1533
/clone="2010003K10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:2010003K10"
/db_xref="MGI:1910406"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="small intestine"
misc_feature 1..1533
/note="putative"
/note="unclassifiable"
BASE COUNT 423 a 326 c 372 g 412 t
ORIGIN
1 agccagcgat ggatgatctc gagctctcag tcttcctgcc tccacttgtg aactcggaac
61 tcgcaggcat gcaccacagt gcctaaaggc ttcatggact ctcttctaag tcgtggacct
121 aagattgatg ttacctttag tcatgcatct atgtttgtgt gtgtcatgtg tgtgagtgta
181 cccctggagg ccagaggtgt tagaatctct ggagctggag ttacaggtgt ttgagagccc
241 cctgaaatga gtgcagggga ttgaacttgg gtccttctgt aagagtaata catgctctga
301 atccctaagc catccctcca gcccaagaaa tggcatggca gattctataa accaaataat
361 agcttggggg acatgacata gtcactggat gccttaacct cttacatagc caactggggc
421 ctatatatac ccctgaatca tgatccttaa ttcctttaca ggatccttag tttaagtata
481 ttttgactta ggtttatttg gcaatttaga tatatctaaa atcaaacttc tcctgcaact
541 gtgttttgag acagggtctc actatgtgga cctggatgtc ctggaactca cagcgatcct
601 cttggctctg cctcccaagt actaggatta aaagcaagca ccaactacat ctgtcacctc
661 tcagctctgt caggcgggca ttcttctgtc agatcccagg agaggcgtgc catccatctt
721 gggcagtctg tcttctgtac gctctgcatt gctgtctggg actacaggca aacattagct
781 gcagcctctt gtctagattg gagggaagcc atcaccttca gactgctctg gaaagccttg
841 tgtgtatgcc tcaggctggg cagtttctgg tgtgttctct ggacctttgg ctattctgat
901 gaaaacttgc ctctgatctc aaatgtttgg caagttgggt gttagtataa actgggatga
961 tgccatctta gaaactgaaa ttctcaaaga acagataacc ccattaatct gttaggatcc
1021 tccaggctaa cagtaatacg attatagaat catcctcact agacacagat agggacgggt
1081 ggccttctga aagaggtcag tgcagaagct gagtgaagag gatgcttgga accttaatgg
1141 gaagctgatg caggaagaga caagtttaag gccagcctgg gttgcagggg gatgtatcac
1201 ctaagagaaa taataaattt atttgacttg gtctgtaggc cagaggacag aaaaattggt
1261 gaaagttggc acagaagcct ttattataca gcagctttcc atagggttgg gaaaatgttt
1321 tattgtaaca gagagagaaa gaaaataaat tacaaacaaa aaacaactct cttagtagcc
1381 tggtgaggtg gcacattcct ttaatcccca cagtgaagac aaaggcaggg agagctctgt
1441 gagtctgagg ctagccaggt ctaaatagag agttccaggc aatccaaatc tccatagtga
1501 gaccctgcct aagaaaggaa aggaaaggaa agg
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