LOCUS AK002514 939 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male kidney cDNA, RIKEN full-length enriched
library, clone:0610010P20 product:immunoglobulin kappa chain
variable 28 (V28), full insert sequence.
ACCESSION AK002514
VERSION AK002514.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 939)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=0610010P20
FEATURES Location/Qualifiers
source 1..939
/clone="0610010P20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:0610010P20"
/db_xref="MGI:1900167"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="kidney"
CDS 101..736
/codon_start=1
/note="immunoglobulin kappa chain variable 28 (V28)
(LocusLink|16114 GB|AK002514, evidence: BLASTN, 100%,
match=939)"
/note="putative"
/protein_id="BAB22154.1"
/transl_table=1
/translation="MTQSPASLSVSVGETVTITCRASENIYSNLAWYQQKQGKSPQLL
VYAATNLADGVPSRFSGSGSGTQYSLKINSLQSEDFGSYFCQHFWGTPRTFGGGTKLE
IKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW
TDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC"
regulatory 922..927
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 939
/note="putative"
BASE COUNT 249 a 255 c 207 g 227 t
ORIGIN
1 gggagtcagc ctcacactga tcacacacag acatgagtgt gncactcagg tcctggggtt
61 gctgctgctg tggcttacag atgccagatg tgacatccag atgactcagt ctccagcctc
121 cctatctgta tctgtgggag aaactgtcac catcacatgt cgagcaagtg agaatattta
181 cagtaattta gcatggtatc agcagaaaca gggaaaatct cctcagctcc tggtctatgc
241 tgcaacaaac ttagcagatg gtgtgccatc aaggttcagt ggcagtggat caggcacaca
301 gtattccctc aagatcaaca gcctgcagtc tgaagatttt gggagttatt tctgtcaaca
361 tttttggggt actcctcgga cgttcggtgg aggcaccaag ctggagatca aacgggctga
421 tgctgcacca actgtatcca tcttcccacc atccagtgag cagttaacat ctggaggtgc
481 ctcagtcgtg tgcttcttga acaacttcta ccccaaagac atcaatgtca agtggaagat
541 tgatggcagt gaacgacaaa atggcgtcct gaacagttgg actgatcagg acagcaaaga
601 cagcacctac agcatgagca gcaccctcac gttgaccaag gacgagtatg aacgacataa
661 cagctatacc tgtgaggcca ctcacaagac atcaacttca cccattgtca agagcttcaa
721 caggaatgag tgttagagac aaaggtcctg agacgccacc accagctccc cagctccatc
781 ctatcttccc ttctaaggtc ttggaggctt ccccacaagc gacctaccac tgttgcggtg
841 ctccaaacct cctccccacc tccttctcct cctcctccct ttccttggct tttatcatgc
901 taatatttgc agaaaatatt caataaagtg agtctttgc
//