LOCUS SEG_CHPMHDRB0 6056 bp DNA linear PRI 24-APR-2017
DEFINITION Pan troglodytes MHC class II (DRB6) pseudogene.
ACCESSION AH001401 M77289 M77290 M77291 M77292 M77293 M77294 M77295
VERSION AH001401.2
KEYWORDS .
SOURCE Pan troglodytes (chimpanzee)
ORGANISM Pan troglodytes
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Pan.
REFERENCE 1 (bases 1 to 6056)
AUTHORS Figueroa,F., O'hUigin,C., Inoki,H. and Klein,J.
TITLE Primate DRB6 pseudogenes: clue to the evolutionary origin of the
HLA-DR2 haplotype
JOURNAL Immunogenetics 34 (5), 324-337 (1991)
PUBMED 1937579
COMMENT On or before Apr 24, 2017 this sequence version replaced M77289.1,
M77290.1, M77291.1, M77292.1, M77293.1, M77294.1, M77295.1,
AH001401.1.
FEATURES Location/Qualifiers
source 1..6056
/organism="Pan troglodytes"
/mol_type="genomic DNA"
/db_xref="taxon:9598"
/haplotype="DR2"
/cell_line="Hugo cell line"
gap 208..307
/estimated_length=unknown
gap 511..610
/estimated_length=unknown
gene 1060..6056
/gene="DRB6"
/pseudo
mRNA join(1060..1327,3590..3871,4662..4772,5337..5360,
5664..6056)
/gene="DRB6"
/pseudo
CDS join(1060..1327,3590..3871,4662..4772,5337..5360,
5664..5677)
/gene="DRB6"
/pseudo
/codon_start=1
/product="MHC class II protein"
exon 1060..1327
/gene="DRB6"
/number=2
/pseudo
gap 1435..1534
/estimated_length=unknown
gap 2305..2404
/estimated_length=unknown
exon 3590..3871
/gene="DRB6"
/product="MHC class II protein"
/number=3
/pseudo
gap 4539..4638
/estimated_length=unknown
exon 4662..4772
/gene="DRB6"
/number=4
/pseudo
gap 4948..5047
/estimated_length=unknown
exon 5337..5360
/gene="DRB6"
/number=5
/pseudo
exon 5664..6056
/gene="DRB6"
/number=6
/pseudo
BASE COUNT 1387 a 1199 c 1380 g 1487 t
ORIGIN
1 aaaagtatac atagtgtttt acatatgtgt atatttacac atatatatgt atgtcggtat
61 gaaactatag aagcacatgt caccaataag agctctgaga cacctttgaa cacttaccct
121 tatcagatga gatttgccaa atgagttgta gaaacaagtt ttttttaact gaatttctga
181 gctttgtgga tttagaaatg caaaggannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
301 nnnnnnnttt tgtacatggt atttcctaaa cctgaaatgt gcctcccgtt ttgtccagac
361 acacaggctc cactctgccc cctggctcac acctgcttaa cctgtcaagt cacatctgaa
421 ctgtcaccct tcagagggtc cttctctggc accctaatgt aattgagatc atcctattat
481 tctctgttct agaactccac acttctgaca nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
601 nnnnnnnnnn gcagcgcagg cctggcacaa ggtcatcact aagaaagtgt tcacaggatg
661 aacgcggtgg gtgctgttga aggaaccagt aaagcctgtg ggatgagaca aggagcagag
721 agtgtcttgg ggtggaggct cccaggagga cggggcaggc tgcggcgctc ggtggatcct
781 cctccactcc tgcttggagg tctccagaac aggctgaggc agggaggggg tcccaaaagc
841 cttgtaatca ttggtagttt tcctgcctgg tccgccgaac ccctgtacgc ctcaggaaga
901 cggagggtga tcagcccctg ggctgtcgtc agggttgctg gtggggctga tcaaggttcc
961 cgtgcgtgca ccccacccag ggagccctgg atggcggtgt cgctgtcagt gtcttcctca
1021 gaggctatcc ctgtgactgg atcgttcatg tccccacagc acgtttcttg gagaaggcta
1081 agtgtgagtg tcatatcttc aatgggacga agcgggtgca gtacctgaac agatacatcc
1141 ataaacggga agagaacctg cgcttcgaca gcgacgtgga ggagttccag gcggtgacag
1201 aactggggcg gcctgtcgcc gagaactgga acagccagaa gggaatcctg gaggagaagc
1261 gggacaaggt ggacatactg cagatacaat tacggggttt ttgagagctt cacagtgcag
1321 ccatcaggtg agcgcggcgg ggggcggggc cgagtccctg tgagctggga atctgagtgt
1381 gtgtgagggc aggggtcggg ggggcaggag agagagagac atctgtgagc atttnnnnnn
1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngagcaa gcagttctga gagcacaggt
1561 gtgtgtgtag agtggatttg tctgggtctg tgtggctgtt gtgggagggg aagcaggagg
1621 gggatgcctc ttatccttgg aggcctctgt ggagaggtga catgggaggt gggtgcaggc
1681 ggctggagag agaggagacc ttgattgtcc tgggtcctta gaggtgcagg gaaaggaaat
1741 gtaagatgtg tgtggctggg gtgaaggttt aggaggagag ctgaggggta tggaaggttt
1801 gggataatgt gaggaggcca gttccagact gtccctggca catacccttc atgtaatctc
1861 tgaaataaaa gtgtgtactg tttacttgca aacgcattag attaacttct aggagaactg
1921 aggagacctc cgaggcacct ctgaagcttc tttaggccta aatttgttgc catttttttg
1981 ttttctttgg gcggatcacg aggtcgggag atcgagacct cctggctaac aaggtgaaac
2041 cccgtctcta ctaaaaatac agaaaaatta gccgggcatg gtggagggcg tctgtcgtct
2101 gtagtcccag ctactaggga ggctgaggcg ggagagtggc gtgaacctgg gaggcggagc
2161 ttgcagtgag ccgagatcgc gccactgcac tccccctggg cgtcagagcg agactctgtc
2221 tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa attattttga cctatttatt ggccagttat
2281 aattactgct ctaagaatcg atatnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2401 nnnngaacgt tttttattta ataaaaatat attgcaaaat gttattaatg attttcaatc
2461 catcttaaat ctacaacttt gtggtattgc tgtctccagg tttctccttc cttctcacaa
2521 aaaattgtat tattgagagt atgctagtgt cagggaggct gggtgtgggg gctcagctat
2581 attcagcact tggagctgcg tcaggttgga ggctgcgtca gagttgagac agctgacaca
2641 tgtgaaccta tctctataaa tcaatagcga gctgtgtgct gctgtatcca gctatcagag
2701 ctagcgattt ggagattgtt ttgcacagag atgcattgat cagctaaatg tgatataaga
2761 agctttcaaa actaaaatga cgttccttaa ttcctaaatc tctgctttag gactcaggct
2821 tttctaggtt cataaagatt tggagaatca tttctgtccg tcccaccttc ccaggggcag
2881 aaccatttct gtggtattct aaggtgtgag tgcatggcgg tactattcct aaaaattcat
2941 actcggtttc ctcatgtacc ctactctgtc cctttatcca cattgtttta aatcatattc
3001 ttctctcaag gtgtaagagg atgataaata ggtgccaagt ggagcaccca cgtgtgatga
3061 gccccctcac agtggaatgg agtgagacgc tatctgacct cataaattga aactatcttc
3121 agtcattgtt ttatagattt tacgttcatt agtcctcata taaccgccag aggcaaatta
3181 gtataattat ccttcattgt aggtgacaaa gttgagacac agaagaatca aaaaaactct
3241 tccaggatca accagtaaaa ggcagacctt ggatttgagc caggcgacct ggctcaggta
3301 tcagtttcaa ttaatacact ctgtactttc aaagatttgt aaacacttta acaatgcatg
3361 acaatttcaa gctatgaaga aacaaataaa atttttacaa catctctcaa atctaatggg
3421 tccacactat cacacgatta aattccaggc tgatgacact gtgagggcgt atggccagct
3481 gtgctgaggc ctcatcaagc cagagcctgg gtttacagag aagcaaacaa acagctgcac
3541 aaggagactc taacttcctg attcttctct ctaccttttt ttctcctagt ccaacctaag
3601 gtgactgtgt atccttcaaa gaaccagccc ctgcagcacc acaacctcct ggtctgctct
3661 gtgagtggtt tctatccagg cagcattgaa gtcaggtggt tccggaacgg ccaggaagag
3721 aaggctgggg tggtgtccac aggcctgatc cagaatggag actggacctt ccagaccctg
3781 gtgatgctgg aaacagttcc tcggagtgga gaggtttaca cctgccaagt ggagcaccca
3841 agcgtgacga gccctctcac agtggaatgg agtgagcagc tttctgaatt catgaatttc
3901 ttacccacca agaaggggac tgtgctaatc cctgagtgtc aggtttctcc tctcccacat
3961 cctattttca tttgctccat gttctcatct ccatcagcgt aggtcagtgg gggtagccct
4021 gtaatcattt ctaaaaacac ctgtacctcc tggagaagca gtcacgcctg ccaggcagga
4081 gaggctgtcc ctgttttgaa cctccccatg atggcacagg tcatggtcac ccagtctccc
4141 tgggctccag gctctgcctc tgggtctgag actgagtttc tggtgctgtt gatctgagtt
4201 gtttgttgtg gtctgagaag aggagaagcg taggggcctt cctgacatga ggggagtcca
4261 atctcaggcc tgccttttat tagctctgtc actctagaca aaatgcttaa cctcattgag
4321 tcttaggctt tctgttgatc agatgttgaa gttgtgcctt acatgaaggc tgtaatattt
4381 gaagaagttt gatgcctgaa ccttgtaact gttcagtgtg atgtgaaaac cattttttcc
4441 ccaaaaaatg gctagttatt tcagttctta cagggcagcc ttcttcccca ttttcaaagc
4501 tccaaatctc agggtctcaa ttaaagaggt tcaatttgnn nnnnnnnnnn nnnnnnnnnn
4561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4621 nnnnnnnnnn nnnnnnnnat aaacctggct tcctctctca ggagcatggt ctgaatctgc
4681 acagagcaag atgctgagtg gagtcggggg ctttgtgctg ggcctgctct tccttgggac
4741 acggctgttc atctacttca ggaatcagaa aggtaagaag catttgggag ctaagtctct
4801 ccataggctt ttctggagga ggaaatatgg ctttactgag gttagttctc agtatatgag
4861 tggccctgga taaagccttt ttttccccaa atgacctcca atgtcctgat aatccagaaa
4921 tcatcagtgc atggttacta tgtcaaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5041 nnnnnnnggc ctgcagagat aagagaaagg ttaacaagta ggggtccttt cagtttgaga
5101 tcctggagca aattaaagga agagccacta agatcactaa nnncccgggg gatcctgtga
5161 cagacacttc acgcttcatg ggtcacatgg tctgtttctg ctcttctctg ccctggttgg
5221 tgtgggttgt ggtgttagag aaatctcagg tgggagatct ggggctggga tattgcgttg
5281 gaggacagat ttgcttccat atcttttaag tgtatatctt ttcctctttt tcccaggaca
5341 ctctggactt cagccaacag gtaatacctt ttaatcctct ttcagaaaca gacttggttt
5401 ccctagaatg atggtagagg tgataaggca tgagacagaa ataataggaa agactttgga
5461 tccaaatttc tgatcaggca atttacacca aaactcctcc tctccactta gaaaaggcct
5521 gtgctctgca ggaatattgg ctcagggaga ctcaggaacg tgtttttctt cttcctgtgg
5581 tgctctcatc tgagttgttg aaagcaggga aaagaagctt ttagtaaagc caagtctgaa
5641 aacaatttcc tctgtctccg caggacttct gagctgaagt gcagatgacc acattcaagg
5701 aagaaccttc tgccccagct ttgcaggatg aaaaactttc ccacttggct cttattcttc
5761 cacaagagct ttctcaggac caggttgcta ctggttcagc aactctgcag aaaatgtcct
5821 cccttgttgc ttcctcagct cctggtcttg gcctgaaatc ccagtactga tagcagcgcc
5881 tcatcttcaa cttttgtgct tccctttacc taaactttcc tgcctcccgt gcatctgtac
5941 tcccctggtg ccacaaacac attgcattat tcaatgtttc tcaaacatgg agttaaaaat
6001 catctggtcc atttcgctgc aaggacaaga aataagaaaa aaggaagact atttcc
//