LOCUS AF208161 2930 bp mRNA linear HUM 22-FEB-2000 DEFINITION Homo sapiens syncytin precursor, mRNA, complete cds. ACCESSION AF208161 VERSION AF208161.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2930) AUTHORS Mi,S., Lee,X., Li,X., Veldman,G.M., Finnerty,H., Racie,L., LaVallie,E., Tang,X.Y., Edouard,P., Howes,S., Keith,J.C. Jr. and McCoy,J.M. TITLE Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis JOURNAL Nature 403 (6771), 785-789 (2000) PUBMED 10693809 REFERENCE 2 (bases 1 to 2930) AUTHORS Sha,M., Lee,X., Li,X., Veldman,G.M., Finnerty,H., Racie,L., LaVallie,E., Tang,X., Edouard,P., Howes,S., Keith,J.C. Jr. and McCoy,J.M. TITLE Direct Submission JOURNAL Submitted (26-NOV-1999) Genetics Institute, 87 Cambridge Park Drive, Cambridge, MA 02140, USA FEATURES Location/Qualifiers source 1..2930 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="AJ172-2s" /tissue_type="testis" repeat_region 1..2930 /rpt_family="Human endogeneous retrovirus HERV-W" 5'UTR 1..929 CDS 930..2546 /note="envelope protein" /codon_start=1 /product="syncytin precursor" /protein_id="AAF28334.1" /translation="MALPYHIFLFTVLLPSFTLTAPPPCRCMTSSSPYQEFLWRMQRP GNIDAPSYRSLSKGTPTFTAHTHMPRNCYHSATLCMHANTHYWTGKMINPSCPGGLGV TVCWTYFTQTGMSDGGGVQDQAREKHVKEVISQLTRVHGTSSPYKGLDLSKLHETLRT HTRLVSLFNTTLTGLHEVSAQNPTNCWICLPLNFRPYVSIPVPEQWNNFSTEINTTSV LVGPLVSNLEITHTSNLTCVKFSNTTYTTNSQCIRWVTPPTQIVCLPSGIFFVCGTSA YRCLNGSSESMCFLSFLVPPMTIYTEQDLYNYVISKPRNKRVPILPFVIGAGVLGALG TGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQDQLNSLAAVVLQNRRALDLLTAE RGGTCLFLGEECCYYVNQSGIVTEKVKEIRDRIQRRAEELRNTGPWGLLSQWMPWILP FLGPLAAIILLLLFGPCIFNLLVNFVSSRIEAVKLQMEPKMQSKTKIYRRPLDRPASP RSDVNDIKGTPPEEISAAQPLLRPNSAGSS" sig_peptide 930..989 mat_peptide 990..2543 /product="syncytin" misc_feature 1869..1880 /inference="non-experimental evidence, no additional details recorded" /note="furin; cleavage site" misc_feature 2043..2120 /note="Region: immunosuppresive region" misc_feature 2235..2357 /note="transmembrane region" 3'UTR 2547..2930 BASE COUNT 842 a 800 c 571 g 717 t ORIGIN 1 aatcgggctg ccttatcgcc aagctccttc aggagaacaa agaacaggcc attaccctgg 61 agaagactgg caactgattt tacccacaag cccaaacctc agggatttca gtatctacta 121 gtctgggtag atactttcac gggttgggca gaggccttcc cctgtaggac agaaaaggcc 181 caagaggtaa taaaggcact agttcatgaa ataattccca gattcggact tccccgaggc 241 ttacagagtg acaatagccc tgctttccag gccacagtaa cccagggagt atcccaggcg 301 ttaggtatac gatatcactt acactgcgcc tgaaggccac agtcctcagg gaaggtcgag 361 aaaatgaatg aaacactcaa aggacatcta aaaaagcaaa cccaggaaac ccacctcaca 421 tggcctgctc tgttgcctat agccttaaaa agaatctgca actttcccca aaaagcagga 481 cttagcccat acgaaatgct gtatggaagg cccttcataa ccaatgacct tgtgcttgac 541 ccaagacagc caacttagtt gcagacatca cctccttagc caaatatcaa caagttctta 601 aaacattaca aggaacctat ccctgagaag agggaaaaga actattccac ccttgtgaca 661 tggtattagt caagtccctt ccctctaatt ccccatccct agatacatcc tgggaaggac 721 cctacccagt cattttatct accccaactg cggttaaagt ggctggagtg gagtcttgga 781 tacatcacac ttgagtcaaa tcctggatac tgccaaagga acctgaaaat ccaggagaca 841 acgctagcta ttcctgtgaa cctctagagg atttgcgcct gctcttcaaa caacaaccag 901 gaggaaagta actaaaatca taaatcccca tggccctccc ttatcatatt tttctcttta 961 ctgttctttt accctctttc actctcactg caccccctcc atgccgctgt atgaccagta 1021 gctcccctta ccaagagttt ctatggagaa tgcagcgtcc cggaaatatt gatgccccat 1081 cgtataggag tctttctaag ggaaccccca ccttcactgc ccacacccat atgccccgca 1141 actgctatca ctctgccact ctttgcatgc atgcaaatac tcattattgg acaggaaaaa 1201 tgattaatcc tagttgtcct ggaggacttg gagtcactgt ctgttggact tacttcaccc 1261 aaactggtat gtctgatggg ggtggagttc aagatcaggc aagagaaaaa catgtaaaag 1321 aagtaatctc ccaactcacc cgggtacatg gcacctctag cccctacaaa ggactagatc 1381 tctcaaaact acatgaaacc ctccgtaccc atactcgcct ggtaagccta tttaatacca 1441 ccctcactgg gctccatgag gtctcggccc aaaaccctac taactgttgg atatgcctcc 1501 ccctgaactt caggccatat gtttcaatcc ctgtacctga acaatggaac aacttcagca 1561 cagaaataaa caccacttcc gttttagtag gacctcttgt ttccaatctg gaaataaccc 1621 atacctcaaa cctcacctgt gtaaaattta gcaatactac atacacaacc aactcccaat 1681 gcatcaggtg ggtaactcct cccacacaaa tagtctgcct accctcagga atattttttg 1741 tctgtggtac ctcagcctat cgttgtttga atggctcttc agaatctatg tgcttcctct 1801 cattcttagt gccccctatg accatctaca ctgaacaaga tttatacaat tatgtcatat 1861 ctaagccccg caacaaaaga gtacccattc ttccttttgt tataggagca ggagtgctag 1921 gtgcactagg tactggcatt ggcggtatca caacctctac tcagttctac tacaaactat 1981 ctcaagaact aaatggggac atggaacggg tcgccgactc cctggtcacc ttgcaagatc 2041 aacttaactc cctagcagca gtagtccttc aaaatcgaag agctttagac ttgctaaccg 2101 ctgaaagagg gggaacctgt ttatttttag gggaagaatg ctgttattat gttaatcaat 2161 ccggaatcgt cactgagaaa gttaaagaaa ttcgagatcg aatacaacgt agagcagagg 2221 agcttcgaaa cactggaccc tggggcctcc tcagccaatg gatgccctgg attctcccct 2281 tcttaggacc tctagcagct ataatattgc tactcctctt tggaccctgt atctttaacc 2341 tccttgttaa ctttgtctct tccagaatcg aagctgtaaa actacaaatg gagcccaaga 2401 tgcagtccaa gactaagatc taccgcagac ccctggaccg gcctgctagc ccacgatctg 2461 atgttaatga catcaaaggc acccctcctg aggaaatctc agctgcacaa cctctactac 2521 gccccaattc agcaggaagc agttagagcg gtcgtcggcc aacctcccca acagcactta 2581 ggttttcctg ttgagatggg ggactgagag acaggactag ctggatttcc taggctgact 2641 aagaatccct aagcctagct gggaaggtga ccacatccac ctttaaacac ggggcttgca 2701 acttagctca cacctgacca atcagagagc tcactaaaat gctaattagg caaaaacagg 2761 aggtaaagaa atagccaatc atctattgcc tgagagcaca gcaggaggga caatgatcgg 2821 gatataaacc caagtcttcg agccggcaac ggcaaccccc tttgggtccc ctccctttgt 2881 atgggagctc tgttttcatg ctatttcact ctattaaatc ttgcaactgc //