LOCUS AF169693 4412 bp mRNA linear HUM 26-JUL-2016 DEFINITION Homo sapiens protocadherin 13 (PCDH13) mRNA, partial cds. ACCESSION AF169693 VERSION AF169693.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4412) AUTHORS Kools,P.F.J. and Van Roy,F. TITLE Identification and characterization of a novel human protocadherin localized on chromosome 13q21, a region containing also protocadherin-8 and -9 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4412) AUTHORS Kools,P.F.J. and Van Roy,F. TITLE Direct Submission JOURNAL Submitted (19-JUL-1999) Department of Molecular Biology, University of Ghent, Flanders Interuniversity Institute for Biotechnology, Ledeganckstraat 35, Ghent B-9000, Belgium FEATURES Location/Qualifiers source 1..4412 /db_xref="H-InvDB:HIT000072357" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="13" /map="13q21" /clone="VR2-6" gene <1..4412 /gene="PCDH13" CDS <1..2846 /gene="PCDH13" /note="transmembrane protein of the cadherin superfamily; contains only a small cytoplasmic domain; putative alternative short form lacking the 3' exon sequences" /codon_start=3 /product="protocadherin 13" /protein_id="AAF89690.1" /translation="GNARSSQALGVSWCPATWHPRLDMGRLHRPRSSTSYRNLPHLFL FFLFVGPFSCLGSYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRSAGRPDPQSQLP ERTGAEWNPPLSFSLASRGLSGQYVTLDNRSGELHTSAQEIDREALCVEGGGGTAWSG SVSISSSPSDSCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENA PVNTRLAIEHPAVDPDVGINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDR ETQDQYVSIITAEDGGSPPLLGSATLTIGISDINDNCPLFTDSQINVTVYGNATVGTP IAAVQAVDKDLGTNAQITYSYSQKVPQASKDLFHLDENTGVIKLFSKIGGSVLESHKL TILANGPGCIPAVITALVSIIKVIFRPPEIVPRYIANEIDGVVYLKELEPVNTPIAFF TIRDPEGKYKVNCYLDGEGPFRLSPYKPYNNEYLLETTKPMDYELQQFYEVAVVAWNS EGFHVKRVIKVQLLDDNDNAPIFLQPLIELTIEENNSPNAFLTKLYATDADSEERGQV SYFLGPDAPSYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDCGKPPRESVATVALT VLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGRNGWVALSVVNQSDIFV IDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPALSSTAKITILLLDINDNPPLVLF PQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTG NITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKE PEINIEEKEPQISIEPTHRKVESVSCMPTLVALSVISLGSITLVTGMGIYICLRKGEK HPREDENLEVQIPLKGKIDLHMRERKPMDISNI" BASE COUNT 1265 a 889 c 967 g 1290 t ORIGIN 1 gagggaatgc gcgcagctca caggccctgg gagtgagctg gtgcccggcg acctggcacc 61 cgcgcctgga tatggggcgt ctacatcgtc ccaggagcag caccagctac aggaacctgc 121 cgcatctgtt tctgtttttc ctcttcgtgg gacccttcag ctgcctcggg agttacagcc 181 gggccaccga gcttctgtac agcctaaacg agggactacc cgcgggggtg ctcatcggca 241 gcctggccga ggacctgcgg ctgctgccca ggtctgcagg gaggccggac ccgcagtcgc 301 agctgccaga gcgcaccggt gctgagtgga acccccctct ctccttcagc ctggcctccc 361 ggggactgag tggccagtac gtgaccctag acaaccgctc tggggagctg cacacttcag 421 ctcaggagat cgacagggag gccctgtgtg ttgaaggggg tggagggact gcgtggagcg 481 gcagcgtttc catctcctcc tctccttctg actcttgtct tttgctgctg gatgtgcttg 541 tcctgcctca ggaatacttc aggtttgtga aggtgaagat cgccatcaga gacatcaatg 601 acaacgcccc gcagttccct gtttcccaga tctcggtgtg ggtcccggaa aatgcacctg 661 tnaacacccg actggccata gagcatcctg ctgtggaccc agatgttggc attaatgggg 721 ttcagaccta tcgcttactg gactaccatg gtatgttcac cctggacgtg gaggagaatg 781 agaatgggga gcgcaccccc tacctaattg tcatgggtgc tttggacagg gaaacccagg 841 accagtatgt gagcatcatc acagctgagg atggtgggtc tccaccactt ttgggcagtg 901 ccactctcac cattggcatc agtgacatta atgacaattg ccctctcttc acagactcac 961 aaatcaatgt cactgtgtat gggaatgcta cagtgggcac cccaattgca gctgtccagg 1021 ctgtggataa agacttgggg accaatgctc aaattactta ttcttacagt cagaaagttc 1081 cacaagcatc taaggattta tttcacctgg atgaaaacac tggagtcatt aaacttttca 1141 gtaagattgg aggaagtgtt ctggagtccc acaagctcac catccttgct aatggaccag 1201 gctgcatccc tgctgtaatc actgctcttg tgtccattat taaagttatt ttcagacccc 1261 ctgaaattgt ccctcgttac atagcaaacg agatagatgg tgttgtttat ctgaaagaac 1321 tggaacccgt taacactccc attgcgtttt tcaccataag agatccagaa ggtaaataca 1381 aggttaactg ctacctggat ggtgaagggc cgtttaggtt atcaccttac aaaccataca 1441 ataatgaata tttactagag accacaaaac ctatggacta tgagctacag cagttctatg 1501 aagtagctgt ggtggcttgg aactctgagg gatttcatgt caaaagggtc attaaagtgc 1561 aacttttaga tgacaatgat aatgctccaa ttttccttca acccttaata gaactaacca 1621 tcgaagagaa caactcaccc aatgcctttt tgactaagct gtatgctaca gatgccgaca 1681 gcgaggagag aggccaagtt tcatattttc tgggacctga tgctccatca tatttttcct 1741 tagacagtgt cacaggaatt ctgacagttt ctactcagct ggaccgagaa gagaaagaaa 1801 agtacagata cactgtcaga gctgttgact gtgggaagcc acccagagaa tcagtagcca 1861 ctgtggccct cacagtgttg gataaaaatg acaacagtcc tcggtttatc aacaaggact 1921 tcagcttttt tgtgcctgaa aactttccag gctatggtga gattggagta attagtgtaa 1981 cagatgctga cgctggacga aatggatggg tcgccctctc tgtggtgaac cagagtgata 2041 tttttgtcat agatacagga aagggtatgc tgagggctaa agtctctttg gacagagagc 2101 agcaaagctc ctatactttg tgggttgaag ctgttgatgg gggtgagcct gccctctcct 2161 ctacagcaaa aatcacaatt ctccttctag atatcaatga caaccctcct cttgttttgt 2221 ttcctcagtc taatatgtct tatctgttag tactgccttc tactctgcca ggctccccgg 2281 ttacagaagt ctatgctgtc gacaaagaca caggcatgaa tgctgtcata gcttacagca 2341 tcatagggag aagaggtcct aggcctgagt ccttcaggat tgaccctaaa actggcaaca 2401 ttactttgga agaggcattg ctgcagacag attatgggct ccatcgctta ctggtgaaag 2461 tgagtgatca tggttatccc gagcctctcc actccacagt catggtgaac ctatttgtca 2521 atgacactgt cagtaatgag agttacattg agagtctttt aagaaaagaa ccagagatta 2581 atatagagga gaaagaacca caaatctcaa tagaaccgac tcataggaag gtagaatctg 2641 tgtcttgtat gcccacctta gtagctctgt ctgtaataag cttgggttcc atcacactgg 2701 tcacagggat gggcatatac atctgtttaa ggaaagggga aaagcatccc agggaagatg 2761 aaaatttgga agtacagatt ccactgaaag gaaaaattga cttgcatatg cgagagagaa 2821 agccaatgga tatttctaat atttgatatt tcatggtgga ataacacaga gaaatgtttt 2881 aactgacttt ggatcttcat cacctaaaaa agagtgtgtt gatggcagtt ccaatgaagg 2941 acaactaatt tataacttgt tctatattgt aaatagctgt ttacaggttt ttaaatttaa 3001 attcagaggt tataaaatgt gtacagcatt tttaagtgaa aattagtact aacagctata 3061 ggacttgtat ttaaaaaaaa aaaaaaaaaa agcttggaca tggtttgcag ctttcataca 3121 ccaagcagtt gattgataaa acctgggagt aaggtaagaa aaatggaaca aatttttatc 3181 taaaaattcc tgtcaccaca agagggcatc agctgctcct ttgcaggaaa ctggggtatt 3241 gtacttggca gttgtacatg aaattaatga aagagtatat tttaaatata ttgtttttaa 3301 cattaaacaa atatgaaatt aaagtaaatt aaatttcacc ctatttaaac atatgataaa 3361 aaaagaaatg cacttgtaaa cagaatgttt attacctcat aagtgcatat atagtttgaa 3421 agagaaggca ttaaaaagaa gtgcgattcc tttttagcaa ggataaaatc attgccttgt 3481 gttacagatt cagcctgctg aagagtattc cactttctgt gtactcgaat tgctttctgt 3541 ttgctttacc actgcacttg ttattattac aagggaaata gatatataca tacatatata 3601 tattcttcat tacaggaaat gtaactagat attgtgccca agaaaaacag ccagaagcaa 3661 agaaatgctt caatctttag ttgcttcata ggcattcatg acattttagt gctttcacaa 3721 cttgttggtc gtactttata cttgggttat atattagact tttataggct tgaaatcatc 3781 catcacataa gaaaatagaa atcatattaa aagtgaattc ttctagaggc ttgtgtacac 3841 tactggttgt tttagttggg ccttttatat gaaagttata ctgtacttat ctttttgttg 3901 ttgtttaggt ttgttgacta ccatttctgg cttcctttct ttggttttgg attaaatcca 3961 acagtttatt tgtaagccct gcagcagatt tctttgataa tttagctttt actgaatctc 4021 ttgcaatgaa gaaagctatt tcatcagtga tttatcactt tcaattcatt gtgtgagctg 4081 gaaatattat tttatatgag agctatagca aaataatctg tataaacaag gaatgtgtta 4141 gcttaaactg gatcatttta ctttttggca tcatgcatct gtactgtacc aaaagtgttt 4201 atatgtctgc aaattaaagg tatatatttt cataatttct ttctcacttt tagcatttta 4261 tatttgaaca tgggcttgtt atttcactga agtgcctgtc atttgtttgt ttttagggtt 4321 aaatgtgggt aacctgtagt attctgctat actaaagttt atattaaatg aattcattac 4381 tcaaaaagaa aatgggtaaa ttattaaaaa aa //