LOCUS AB795033 549 bp RNA linear VRL 27-SEP-2013 DEFINITION Japanese encephalitis virus genomic RNA, 3'UTR region, partial sequence, strain: JEV/Bo/Miyazaki/1/2009. ACCESSION AB795033 VERSION AB795033.1 KEYWORDS . SOURCE Japanese encephalitis virus ORGANISM Japanese encephalitis virus Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus japonicum. REFERENCE 1 (bases 1 to 549) AUTHORS Yamakawa,M. and Shirafuji,H. TITLE Direct Submission JOURNAL Submitted (28-FEB-2013) to the DDBJ/EMBL/GenBank databases. Contact:Hiroaki Shirafuji National Institute of Animal Health, Kyushu Research Station; 2702 Chuzan, Kagoshima, Kagoshima 891-0105, Japan URL :http://www.naro.affrc.go.jp/niah/index.html REFERENCE 2 AUTHORS Katayama,T., Saito,S., Horiuchi,S., Maruta,T., Kato,T., Yanase,T., Yamakawa,M. and Shirafuji,H. TITLE Nonsuppurative Encephalomyelitis in a Calf in Japan and Isolation of Japanese Encephalitis Virus Genotype 1 from the Affected Calf JOURNAL J. Clin. Microbiol. 51, 3448-3453 (2013) REMARK DOI:10.1128/JCM.00737-13 COMMENT FEATURES Location/Qualifiers source 1..549 /collection_date="2009" /country="Japan:Miyazaki" /db_xref="taxon:11072" /host="Bos taurus" /mol_type="genomic RNA" /organism="Japanese encephalitis virus" /strain="JEV/Bo/Miyazaki/1/2009" 3'UTR 1..>549 /note="3'UTR region" BASE COUNT 152 a 132 c 163 g 102 t ORIGIN 1 ataggattaa gtcatgtgtg taatgtgaga taagaaaatg tgcatgtgga gtcaggccag 61 caaaagctgc caccggatac tgagtagacg gtgctgcctg cgtctcagtt ccaggaggac 121 tgggttaaca aatctgacaa cggaaggtgg gaaagccctc agaaccgtct cggaagcagg 181 tccctgctca ccggaagttg aaagaccaac gtcaggccac aattctgtgc cactccgctg 241 gggagtgcgg cctgcgcagc cccaggagga ctgggttaac aaagccgttg aggcccccac 301 ggcccaagcc tcgtctaaga tgcaatagac taggtgtaag gactagaggt tagaggagac 361 cccgtggaaa caacattgtg cggcccaagc cccctcgaag ctgtagagga ggtggaagga 421 ctagaggtta gaggagaccc cgcatttgca tcaaaacagc atattgacac ctgggaatag 481 actgggagat ctactgctct atctcaacat cagctactag gcacagagcg ccgaagtatg 541 tagctggtg //